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Report for CCDS48744.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48744.1 Public Mus musculus 11 Mtmr3 10 38.1 68 CCDS HistoryNCBI Gene:74302Re-query CCDS DB by CCDS ID:48744.1Re-query CCDS DB by GeneID:74302

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Sequence IDs included in CCDS 48744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000040448 ENSMUSP00000049079 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040448Link to Ensembl Protein Viewer:ENSMUSP00000049079Re-query CCDS DB by Nucleotide ID:ENSMUST00000040448Re-query CCDS DB by Protein ID:ENSMUSP00000049079
Original member Current member EBI,WTSI ENSMUST00000109943 ENSMUSP00000105569 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109943Link to Ensembl Protein Viewer:ENSMUSP00000105569Re-query CCDS DB by Nucleotide ID:ENSMUST00000109943Re-query CCDS DB by Protein ID:ENSMUSP00000105569
Original member Current member EBI,WTSI OTTMUST00000011297 OTTMUSP00000005264 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000011297Link to Vega Protein Viewer:OTTMUSP00000005264Re-query CCDS DB by Nucleotide ID:OTTMUST00000011297Re-query CCDS DB by Protein ID:OTTMUSP00000005264
Original member Current member NCBI NM_028860.2 NP_083136.2 Accepted alive Link to Nucleotide Sequence:NM_028860.2Link to Protein Sequence:NP_083136.2Re-query CCDS DB by Nucleotide ID:NM_028860Re-query CCDS DB by Protein ID:NP_083136Link to BLink:NP_083136.2

Chromosomal Locations for CCDS 48744.1

Assembly GRCm38 (GCF_000001635.20)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 11Link to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

Chromosome Start Stop Links
11 4482768 4482939 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4485363 4485451 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4487234 4488632 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4489622 4489767 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4490978 4491148 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4491807 4491992 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4492719 4492914 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4497338 4497449 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4497931 4498062 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4498888 4499093 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4504032 4504145 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4507590 4507686 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4517741 4517907 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4520832 4520914 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4527836 4527952 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4528317 4528406 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 4531222 4531224 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3480 nt):
ATGGATGAAGAGATGCGGCATAGCCTTGAGTGCATCCAGGCCAATCAGATCTTTCCCAGGAAGCAGCTGA
TT
CGGGAGGATGAGAATCTTCAGGTTCCTTTCCTTGAACTTCATGGAGAGAGCACAGAGTATGTGGGCCG
T
GCTGAGGAGGCCATCATTGCTCTTTCTAATTACAGGCTTCACATCAAGTTCAAGGAGTCTCTTGTCAAT
GTT
CCATTACAGCTTATTGAAAGCGTTGAATGCCGTGATATATTTCAGCTTCATTTGACATGCAAAGACT
GC
AAAGTTATCAGGTGTCAGTTCCCAACCTTTGAGCAATGTCAAGATTGGCTTAAGAGATTGAACAATGC
A
ATCCGACCACCTGGTAAAATAGAAGATCTCTTCTCATTTGCATACCATGCTTGGTGCATGGAGGTCTAC
GCC
AGTGAAAAGGAGCAGCATGGAGACCTGTGCAGACCAGGGGAACATGTGACGTCAAGGTTTAAGAATG
AA
GTGGAGCGGATGGGTTTTGATATGAACAATGCCTGGAGGATTTCCAACATCAATGAGAAATACAAATT
A
TGTGGTAGTTATCCACAAGAGCTCATAGTGCCTGCTTGGATCACTGACAAAGAGCTGGAAAGCGTGGCA
GGC
TTCAGATCCTGGAAGCGCATCCCTGCTGTCATCTACAGGCACCAGAGCAATGGAGCTGTCATTGCCC
GC
TGCGGACAACCGGAGGTTAGCTGGTGGGGCTGGCGAAATGCTGATGATGAACATCTGGTGCAGTCAGT
G
GCCAGAGCCTGTGCTTCTGACTCTCAGTCAAGTATCAGCAAGGTTTCCACTCGGAACAGTTGTCGGGAC
TTT
CCCAACGCAGGGGATCTTTCAGATGTGGAGTTCGATTCCTCTCTGTCAAATACTTCAGGAGCAGAAA
GT
TTAGCTCTCCAGCCCCAGAAGCTTTTGATCTTGGATGCACGCTCCTATGCAGCAGCTGTGGCAAATCG
A
GCCAAAGGAGGAGGCTGTGAGTGCCCAGAGTATTATCCTAACTGTGAAGTTGTGTTTATGGGAATGGCA
AAC
ATACATTCTATCCGGAGGAGTTTCCAGTCTCTGCGGCTGCTGTGCACACAGATGCCAGATCCTGGAA
A
T
TGGCTTTCTGCCCTTGAAAGTACAAAGTGGCTCCATCACCTATCTGTGCTTCTGAAGTCGGCACTTCT
C
GTGGTGCATGCTGTGGACCGTGATCAGCGACCAGTGCTAGTGCACTGCTCCGATGGCTGGGATCGGACT
CCC
CAGATTGTGGCCCTAGCTAAGCTCCTACTTGACCCTTATTACCGAACCATAGAGGGTTTCCAAGTCC
TG
GTGGAGATGGAATGGCTCGATTTTGGCCATAAGTTTGCTGACCGGTGTGGTCATGGGGAGGACTCAGA
T
GATCTGAATGAGCGCTGCCCAGTGTTTCTACAATGGCTTGACTGTGTTCATCAACTTCAGAGGCAGTTT
CCT
TGCTCTTTTGAGTTCAACGAAGCATTCCTTGTGAAACTGGTACAGCATACCTATTCCTGTCTCTTTG
GA
ACATTCCTGTGCAACAACGCCAAAGAGAGAGGGGAAAAGCAGACTCAGGAACGGACATGCTCTGTGTG
G
TCACTTCTTCGAGCAGGCAACAAGGCTTTCAAAAACCTACTGTATTCATCTCAGTCAGAAGCCGTGCTC
TAC
CCCGTGTGCCATGTGCGGAATCTGATGCTGTGGAGCGCAGTGTACCTTCCCTGCCCATCCCCATCTA
CC
CCCACAGATGACAGCTGTGCACCATACCCAGTCCCAGGCACTAGCCCTGATGAGCCCCCACTGAGCCG
G
CTACCCAAGACTAGATCATTTGACAATCTGACCACAACCTGCGAAAACATGGTGCCGCTGGCCAGCCGG
CGC
AGCAGTGACCCCAGCCTGAATGAGAAGTGGCAGGAGCACGGGCGCTCGCTGGAGCTGAGCAGCTTTG
CC
AGCGCTGGGGAAGAGGTGCCTGCTATGGACAGCCTGCGCAAGCCCAGCAGGCTGCTCGGAGGTGCTGA
G
CTTTCTGTGGCAGCCGGAGTGGCTGAAGGGCAGATGGAGAACATTTTGCAAGAGGCCACCAAAGAGGAG
AGT
GGGGTAGAAGAGCCTACCCACAGGGGGCACACTGAGGTGCCAGAGGTCAAAGAGGAGGCACCCCTAG
CA
AAAGAAAGTAGCATGGCGGCCGAGGGCCCCGTTGTACTTTACCAAGAACCACAGCTGGATGACGCTAC
T
TTAAGAAGCCATCAAGGCCCCAGCCTCTCTTTGTTCTCCCAGGGTATTCCTGAACATCAGGATGGGCAC
AAT
GTCCTCTCTAGTTCACTCCAAGCTCCTCTCAGGGGAGAGGACTCCCAGGAGGTCCCTGTAGAACAGC
CT
CAAGTAGAGAATATTGCAGAGGACAGGGAGAATGTAGCTCCTGCTGTCCCAGTAGATGCAAAAGTTGG
C
CTTGGTATCTCACAGTCTAGTTCTCTGCTGCCTTCCCAAGTCCCATTCGAGACAAGAGGACCACACATC
AAC
AACTCCGTGCACATGTTACTCGAAGATAAGGTAAAGTCAGAAAGTGGGCCCCAGCTCCATCACAGAC
CT
TGCCCAGCAAGCAGTGGTAGATTCAGTGGCAAGGACATGCTTCCTGTAGCACCAGAGCCCAGGTCTGC
T
GAGAGGCCCCAGTGGGACTCTGTGCTACACAGGACTTCATCCCCTGGCAACACCCTTAGCCTGCTGCAG
GCT
CCTTGTGCCTTGCCGTTAGATAAATGTAGACAGGGAATTGTGTGCAACGGTGCCCTAGAGACTGAAA
AC
AAGGCCTCAGAACAGCCTGCAGGGTTTGACACCCTTCAGAAGTACCCCACACCCAATGGGCATTGTGC
C
AATTGGGAGGCTGGGAGGAGCAAGGACTCACTGAGCCACCAGCTGTCTGCCACAAGCTGTAGCTCTGCT
CAC
TTGTACTCGAGGAACTTGCACCACAAGTGGCTGAATAGCCACTCAGGGAGGCCATCCACTACCAGCA
GC
CCTGACCAGCCTTCCCGCAGCCACCTGGATGACGATGGCATGCCTGTGTACACGGACACAATCCAACA
G
CGCCTGCGACAGATAGAGTCTGGTCACCAGCAGGAAGTGGAGACCTTGAAGAAACAAGTCCAGGAGTTG
AAG
AGTCGCCTGGAGAGCCAGTACCTGACCAGCTCTCTGCGCTTCAATGGAGACTTTGGAGATGAAGTGA
TG
ACTCGTTGGCTACCTGACCACCTGGCTGCCCACTGCTATGCCTGTGACAGTGCCTTCTGGCTCGCCAG
T
AGGAAGCACCACTGCAGGAATTGTGGGAATGTATTCTGCTCCAGTTGTTGTAACCAGAAGGTTCCGGTT
CCT
AGCCAGCAGCTCTTTGAACCCAGTCGAGTGTGCAAGTCTTGCTATAGCAGCCTCCATCCTACAAGCT
CC
AGCATTGACCTTGAACTGGATAAGCCTATTGCTGCCACTTCAAACTGA


Translation (1159 aa):
MDEEMRHSLECIQANQIFPRKQLIREDENLQVPFLELHGESTEYVGRAEEAIIALSNYRLHIKFKESLVN
V
PLQLIESVECRDIFQLHLTCKDCKVI
RCQFPTFEQCQDWLKRLNNAIRPPGKIEDLFSFAYHAWCMEVY
A
SEKEQHGDLCRP
GEHVTSRFKNEVERMGFDMNNAWRISNINEKYKLCGSYPQELIVPAWITDKELESVA
G
FRSWKRIPAVIY
RHQSNGAVIARCGQPEVSWWGWRNADDEHLVQSVARACASDSQSSISKVSTRNSCRD
F
PNAGDLSDVEF
DSSLSNTSGAESLALQPQKLLILDARSYAAAVANRAKGGGCECPEYYPNCEVVFMGMA
N
IHSIRRSFQSLRLLCTQMPDPG
NWLSALESTKWLHHLSVLLKSALLVVHAVDRDQRPVLVHCSDGWDRT
P
QIVALAKLLLDPYYRTIE
GFQVLVEMEWLDFGHKFADRCGHGEDSDDLNERCPVFLQWLDCVHQLQRQF
P
CSFEFNEAFL
VKLVQHTYSCLFGTFLCNNAKERGEKQTQERTCSVWSLLRAGNKAFKNLLYSSQSEAVL
Y
PVCHVRNLMLWSAVYLPCPSPSTPTDDSCAPYPVPGTSPDEPPLS
RLPKTRSFDNLTTTCENMVPLASR
R
SSDPSLNEKWQEHGRSLELSSFASAGEEVPAMDSLRKPSRLLGGAELSVAAGVAEGQMENILQEATKEE
S
GVEEPTHRGHTEVPEVKEEAPLAKESSMAAEGPVVLYQEPQLDDATLRSHQGPSLSLFSQGIPEHQDGH
N
VLSSSLQAPLRGEDSQEVPVEQPQVENIAEDRENVAPAVPVDAKVGLGISQSSSLLPSQVPFETRGPHI
N
NSVHMLLEDKVKSESGPQLHHRPCPASSGRFSGKDMLPVAPEPRSAERPQWDSVLHRTSSPGNTLSLLQ
A
PCALPLDKCRQGIVCNGALETENKASEQPAGFDTLQKYPTPNGHCANWEAGRSKDSLSHQLSATSCSSA
H
LYSRNLHHKWLNSHSGRPSTTSSPDQPSRSHLDDDGMPVYTDTIQQRLRQIESGHQQEVETLKKQVQEL
K
SRLESQYLTSSLRFNGDFGDEV
MTRWLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPV
P
SQQLFEPSRVCKSCYSSLHPTSSSIDLELDKPIAATSN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Map Viewer
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  UCSC Genome Browser
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