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Report for CCDS35703.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35703.1 Public Mus musculus 1 Avpr1b 10 38.1 68 CCDS HistoryNCBI Gene:26361Re-query CCDS DB by CCDS ID:35703.1Re-query CCDS DB by GeneID:26361

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Sequence IDs included in CCDS 35703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000027690 ENSMUSP00000027690 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027690Link to Ensembl Protein Viewer:ENSMUSP00000027690Re-query CCDS DB by Nucleotide ID:ENSMUST00000027690Re-query CCDS DB by Protein ID:ENSMUSP00000027690
Original member Current member EBI,WTSI OTTMUST00000049390 OTTMUSP00000022873 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000049390Link to Vega Protein Viewer:OTTMUSP00000022873Re-query CCDS DB by Nucleotide ID:OTTMUST00000049390Re-query CCDS DB by Protein ID:OTTMUSP00000022873
Original member Current member NCBI NM_011924.2 NP_036054.1 Accepted alive Link to Nucleotide Sequence:NM_011924.2Link to Protein Sequence:NP_036054.1Re-query CCDS DB by Nucleotide ID:NM_011924Re-query CCDS DB by Protein ID:NP_036054Link to BLink:NP_036054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036054.1 421 Q9WU02 421 100% 0 0

Chromosomal Locations for CCDS 35703.1

Assembly GRCm38 (GCF_000001635.20)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 1Link to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

Chromosome Start Stop Links
1 131599741 131600671 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 131609411 131609745 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGATTCTGAGCCTTCTTGGACTGCTACCCCCTCCCCTGGGGGCACCCTGTTTGTCCCCAATACCACCA
CA
CCCTGGCTGGGTAGGGATGAAGAGCTAGCCAAGGTGGAAATTGGTATCCTAGCTACTGTCCTGGTTCT
G
GCCACAGGAGGCAACCTGGCTGTACTACTGATTCTGGGCCTCCAGGGCCATAAGCGCTCCCGCATGCAT
CTG
TTCGTGCTGCACTTGGCCCTGACCGACCTGGGCGTGGCGCTTTTCCAGGTACTGCCTCAGCTGCTCT
GG
GACATCACCTATCGCTTCCAGGGCTCTGACCTCCTCTGCCGGGCTGTCAAATATCTACAGGTGCTCAG
C
ATGTTTGCTTCCACTTACATGCTGCTGGCCATGACGCTGGACCGGTACCTGGCTGTCTGTCACCCTCTT
CGA
AGCCTCCAGCAGCCCAGCCAGTCCACCTACCCTCTTATTGCTGCTCCCTGGCTGCTGGCTGCCATCC
TC
AGCCTCCCTCAAGTGTTCATTTTTTCGTTGCGAGAGGTGATCCAGGGCTCAGGGGTGCTGGACTGCTG
G
GCAGATTTCTACTTTTCCTGGGGCCCGCGGGCCTACATCACCTGGACCACCATGGCCATCTTTGTGCTG
CCC
GTGGTGGTGCTCACAGCTTGCTATGGCCTCATCTGCCACGAGATCTACAAGAACCTGAAAGTCAAGA
CA
CAGGCTGGCAGGGAGGAAAGAAGGGGCTGGCCCAAGTCCTCATCTTCTGCCGCTGCTGCAGCCACTAG
G
GGGCTGCCGTCCCGGGTCAGCAGCATCAGTACCATCTCCAGGGCAAAGATCCGAACCGTGAAGATGACC
TTT
GTCATTGTGCTGGCCTACATTGCTTGCTGGGCACCTTTCTTCAGTGTCCAGATGTGGTCTGTGTGGG
AC
GAGAATGCCCCTAATGAAGATTCTACCAATGTGGCTTTCACCATCTCGATGCTTCTGGGCAACCTCAG
C
AGCTGCTGCAACCCCTGGATCTATATGGGCTTCAACAGCCACCTGTTGCCACGTTCCCTGAGTCACCGC
GCC
TGCTGCAGGGGTTCCAAGCCCCGAGTGCACAGGCAGCTCTCCAACAGCAGCCTCGCTAGCCGCCGCA
CA
ACACTGCTGACCCACACCTGTGGTCCATCTACTCTCCGTCTTAGCCTTAACCTCAGCCTCCATGCAAA
G
CCTAAGCCTGCGGGCTCGCTGAAGGATTTGGAGCAGGTGGATGGAGAAGCCACTATGGAGACCAGCATC
TCT
TAG


Translation (421 aa):
MDSEPSWTATPSPGGTLFVPNTTTPWLGRDEELAKVEIGILATVLVLATGGNLAVLLILGLQGHKRSRMH
L
FVLHLALTDLGVALFQVLPQLLWDITYRFQGSDLLCRAVKYLQVLSMFASTYMLLAMTLDRYLAVCHPL
R
SLQQPSQSTYPLIAAPWLLAAILSLPQVFIFSLREVIQGSGVLDCWADFYFSWGPRAYITWTTMAIFVL
P
VVVLTACYGLICHEIYKNLKVKTQAGREERRGWPKSSSSAAAAATRGLPSRVSSISTISRAKIRTVKMT
F
VIVLAYIACWAPFFSVQMWSVWDENAPNE
DSTNVAFTISMLLGNLSSCCNPWIYMGFNSHLLPRSLSHR
A
CCRGSKPRVHRQLSNSSLASRRTTLLTHTCGPSTLRLSLNLSLHAKPKPAGSLKDLEQVDGEATMETSI
S




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