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Report for CCDS24523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24523.1 Public Mus musculus 11 Hba-a1 16 104 75 CCDS HistoryNCBI Gene:15122Re-query CCDS DB by CCDS ID:24523.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 24523.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000093209 ENSMUSP00000090897 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093209Link to Ensembl Protein Viewer:ENSMUSP00000090897Re-query CCDS DB by Nucleotide ID:ENSMUST00000093209Re-query CCDS DB by Protein ID:ENSMUSP00000090897
Original member Current member EBI,WTSI OTTMUST00000011991 OTTMUSP00000005553 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000011991Link to Vega Protein Viewer:OTTMUSP00000005553Re-query CCDS DB by Nucleotide ID:OTTMUST00000011991Re-query CCDS DB by Protein ID:OTTMUSP00000005553
Original member Current member NCBI NM_008218.2 NP_032244.2 Accepted alive Link to Nucleotide Sequence:NM_008218.2Link to Protein Sequence:NP_032244.2Re-query CCDS DB by Nucleotide ID:NM_008218Re-query CCDS DB by Protein ID:NP_032244Link to BLink:NP_032244.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032244.2 142 P01942 142 99.2958% 0 1

Chromosomal Locations for CCDS 24523.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 11Link to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32283707 32283801 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 32283924 32284128 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 32284263 32284391 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGTGCTCTCTGGGGAAGACAAAAGCAACATCAAGGCTGCCTGGGGGAAGATTGGTGGCCATGGTGCTG
AA
TATGGAGCTGAAGCCCTGGAAAGGATGTTTGCTAGCTTCCCCACCACCAAGACCTACTTCCCTCACTT
T
GATGTAAGCCACGGCTCTGCCCAGGTCAAGGGTCACGGCAAGAAGGTCGCCGATGCTCTGGCCAATGCT
GCA
GGCCACCTCGATGACCTGCCCGGTGCCCTGTCTGCTCTGAGCGACCTGCATGCCCACAAGCTGCGTG
TG
GATCCCGTCAACTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTAGCCACCACCCTGCCGA
T
TTCACCCCCGCGGTGCATGCCTCTCTGGACAAATTCCTTGCCTCTGTGAGCACCGTGCTGACCTCCAAG
TAC
CGTTAA


Translation (142 aa):
MVLSGEDKSNIKAAWGKIGGHGAEYGAEALERMFASFPTTKTYFPHFDVSHGSAQVKGHGKKVADALANA
A
GHLDDLPGALSALSDLHAHKLRVDPVNFK
LLSHCLLVTLASHHPADFTPAVHASLDKFLASVSTVLTSK
Y
R




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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