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Report for CCDS27535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27535.1 Under review, update Mus musculus 15 Cyp11b1 23 108 98 CCDS HistoryNCBI Gene:110115Re-query CCDS DB by CCDS ID:27535.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170259.2 ENSMUSP00000127888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170259.2Link to Ensembl Protein Viewer:ENSMUSP00000127888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170259Re-query CCDS DB by Protein ID:ENSMUSP00000127888
Original member NCBI NM_001033229.3 NP_001028401.2 Updated not alive Link to Nucleotide Sequence:NM_001033229.3Link to Protein Sequence:NP_001028401.2Re-query CCDS DB by Nucleotide ID:NM_001033229Re-query CCDS DB by Protein ID:NP_001028401
Current member NCBI NM_001033229.4 NP_001028401.3 Pending alive Link to Nucleotide Sequence:NM_001033229.4Link to Protein Sequence:NP_001028401.3Re-query CCDS DB by Nucleotide ID:NM_001033229Re-query CCDS DB by Protein ID:NP_001028401Link to BLAST:NP_001028401.3

Chromosomal Locations for CCDS 27535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74835753 74835866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74836233 74836421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74836509 74836587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74836820 74836986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74838494 74838645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74838905 74839108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74839227 74839426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74840810 74840965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74841368 74841612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGACAATGGCTCTCAGGGTGACAACAGATGTGTGGCTGGCAAGACCCTGGCAGTGCCTGCACAGGACAA
GGGCACTGGGCACCACGGCAACACTGGCCCCAAAGACCCTGCAGCCCTTTGAAGCCATACCACAGTACTC
CAGGAACAAGTGGCTGAAGATGATACAGATCCTGAGGGAGCAGGGCCAAGAAAACCTACACCTGGAGATG
CATCAGGTCTTCCGGGAGCTGGGGCCCATTTTCAGGCACAGTGTAGGGAAAACACAGATTGTGTTTGTGA
CGTTGCCGGAGGATGTTGAGAAGCTGTACCAGGTAGAGAGTACGCACCCTTGCCGCATGCCCTTGGAATC
CTGGATAGTCCATAGAGAACTCCGTGGCCTGGGACGTGGTGTGTTCTTGCTAAATGGGCCAGAATGGTAC
TTCAACCGACTGCAGCTGAACCCAAATGTTCTGTCACCAAAAGCCGTTCAAAAATTTGTCCCCTTGGTGG
ATGGGATAGCAAGGGACTTTGTGGATAACCTGAAGAAGAAAATGCTGGAAAGTGTCCATGGTAGCTTCTC
TATGGACTTTCAGTCCAGTGTGTTCAACTATACCATAGAAGCTAGCCACTTTGTTCTTTTTGGGGAGCGG
CTGGGCCTCATTGGCCGTGATCTGAGCCCTGACAGCCTGAAGTTCCTCCACACCCTGCACTCCATGTTCA
AAACCACCACACAGCTCTTGTACTTGCCCAGGAGCCTGACCCGATGGACAAGCACCAGGGTGTGGAAAGA
AAACTTAGAGTCCTGGGATTTCATCTCTGAATATGTCACCAAATGTATCAAGAATGTGTATCGAGAGCTG
GCAGAGGGTCGTCCACAGTCCTGGAGTGTCACAGCAGAGCTGGTAGCTGAGAGAACTCTGTCAATGGATG
CCATCCAGGCTAACTCAATGGAACTCATTGCTGGAAGCACTGACACGACATCAACCCCCTTGGTAATGAC
TTTCTTTGAGCTGGCTCGGAACCCAGATGTTCAGCAGGCCCTGAGGCAGGAGAGCCTGGCAGCTGAGGCC
AGCATCGCTGCAAATCCTCAGAAGGCCATGTCAGACCTGCCCTTGCTGAGGGCTGCCCTTAAAGAGACCT
TGAGGCTCTATCCTGTTGGTACTTTTCTGGAGAGAATTCTAAGCTCAGACTTGGTGCTTCAGAACTACCA
TGTCCCTGCTGGGACAGTCCTCAATGTGAATCTGTATTCCATGGGCCGGAACCCTGCAGTGTTCCCAAGG
CCTGAACGCTATATGCCTCAGCGCTGGCTGGAGAGGAAAAGGAGTTTCAAGCACCTGGCCTTTGGCTTTG
GGGTGCGCCAGTGCCTGGGGAGGCGCCTGGCAGAGGCAGAGATGATGCTCCTGCTTCACCATGTGCTGAA
ATCCTTCCACGTGGAGACACAAGAGAAAGAGGATGTGCGGATGGCCTACCGCTTCGTTTTGATGCCCAGC
TCCAGTCCTCTCCTCACTTTCAGGCCTGTCAACTAG

Translation (501 aa):
MTMALRVTTDVWLARPWQCLHRTRALGTTATLAPKTLQPFEAIPQYSRNKWLKMIQILREQGQENLHLEM
HQVFRELGPIFRHSVGKTQIVFVTLPEDVEKLYQVESTHPCRMPLESWIVHRELRGLGRGVFLLNGPEWY
FNRLQLNPNVLSPKAVQKFVPLVDGIARDFVDNLKKKMLESVHGSFSMDFQSSVFNYTIEASHFVLFGER
LGLIGRDLSPDSLKFLHTLHSMFKTTTQLLYLPRSLTRWTSTRVWKENLESWDFISEYVTKCIKNVYREL
AEGRPQSWSVTAELVAERTLSMDAIQANSMELIAGSTDTTSTPLVMTFFELARNPDVQQALRQESLAAEA
SIAANPQKAMSDLPLLRAALKETLRLYPVGTFLERILSSDLVLQNYHVPAGTVLNVNLYSMGRNPAVFPR
PERYMPQRWLERKRSFKHLAFGFGVRQCLGRRLAEAEMMLLLHHVLKSFHVETQEKEDVRMAYRFVLMPS
SSPLLTFRPVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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