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Report for CCDS11228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11228.1 Public Homo sapiens 17 TMEM199 24 110 108 CCDS HistoryNCBI Gene:147007Re-query CCDS DB by CCDS ID:11228.1Re-query CCDS DB by GeneID:147007See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11228.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292114.8 ENSP00000292114.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292114.8Link to Ensembl Protein Viewer:ENSP00000292114.3Re-query CCDS DB by Nucleotide ID:ENST00000292114Re-query CCDS DB by Protein ID:ENSP00000292114
Original member Current member NCBI NM_152464.3 NP_689677.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152464.3Link to Protein Sequence:NP_689677.1Re-query CCDS DB by Nucleotide ID:NM_152464Re-query CCDS DB by Protein ID:NP_689677Link to BLAST:NP_689677.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689677.1 208 Q8N511 208 100% 0 0

Chromosomal Locations for CCDS 11228.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28357671 28357881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28358916 28358989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28359315 28359404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28360529 28360571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28360735 28360847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28361157 28361252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGCGTCCTCTTTGCTTGCGGGCGAGCGATTGGTGCGTGCTTTGGGCCCCGGCGGGGAGCTGGAGCCAG
AGCGGCTACCCCGAAAGCTGCGGGCCGAGCTTGAGGCCGCGCTGGGGAAGAAGCACAAGGGCGGTGATAG
CTCCAGTGGCCCCCAACGCTTGGTTTCTTTCCGTCTCATCCGGGATCTGCACCAGCATCTGAGAGAAAGG
GATTCCAAACTATACCTCCATGAGCTCCTAGAAGGCAGTGAAATCTATCTCCCAGAGGTTGTGAAGCCTC
CACGGAACCCAGAACTAGTTGCCCGGCTGGAGAAGATTAAGATACAGCTGGCCAATGAGGAATATAAACG
GATCACCCGCAACGTCACTTGTCAGGATACAAGACATGGTGGGACTCTCAGCGACCTGGGAAAGCAAGTG
AGATCATTGAAGGCTCTGGTCATCACCATCTTCAATTTCATTGTCACGGTGGTTGCTGCCTTCGTCTGCA
CTTACCTTGGAAGCCAATATATCTTCACAGAAATGGCCTCGCGGGTGCTAGCTGCATTGATCGTCGCCTC
TGTGGTGGGTCTGGCCGAGCTGTATGTCATGGTGCGGGCAATGGAAGGCGAGCTGGGAGAACTGTAA

Translation (208 aa):
MASSLLAGERLVRALGPGGELEPERLPRKLRAELEAALGKKHKGGDSSSGPQRLVSFRLIRDLHQHLRER
DSKLYLHELLEGSEIYLPEVVKPPRNPELVARLEKIKIQLANEEYKRITRNVTCQDTRHGGTLSDLGKQV
RSLKALVITIFNFIVTVVAAFVCTYLGSQYIFTEMASRVLAALIVASVVGLAELYVMVRAMEGELGEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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