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Report for CCDS2828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2828.1 Public Homo sapiens 3 TMEM115 24 110 108 CCDS HistoryNCBI Gene:11070Re-query CCDS DB by CCDS ID:2828.1Re-query CCDS DB by GeneID:11070See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266025.4 ENSP00000266025.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266025.4Link to Ensembl Protein Viewer:ENSP00000266025.3Re-query CCDS DB by Nucleotide ID:ENST00000266025Re-query CCDS DB by Protein ID:ENSP00000266025
Original member Current member NCBI NM_007024.5 NP_008955.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007024.5Link to Protein Sequence:NP_008955.1Re-query CCDS DB by Nucleotide ID:NM_007024Re-query CCDS DB by Protein ID:NP_008955Link to BLAST:NP_008955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008955.1 351 Q12893 351 100% 0 0

Chromosomal Locations for CCDS 2828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50355343 50355547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50358213 50359063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGCAACGTGCCCTGCCAGGCGCCCGCCAGCACTTGGGGGCCATTCTGGCCAGCGCCAGCGTGGTGGTGA
AG
GCTCTGTGTGCGGCGGTACTATTCCTCTACCTGCTCTCCTTCGCCGTGGACACAGGCTGCCTGGCGGT
C
ACCCCGGGCTACCTCTTTCCTCCCAACTTCTGGATCTGGACCCTGGCCACCCATGGGCTGATGGAGCAG
CAT
GTGTGGGACGTGGCCATCAGCCTGACAACGGTGGTGGTGGCCGGGCGTTTGCTGGAGCCCCTCTGGG
GG
GCCTTGGAGCTGCTCATCTTCTTCTCAGTGGTGAATGTGTCTGTAGGGCTGCTGGGGGCCTTCGCCTA
C
CTCCTCACCTACATGGCTTCCTTCAACCTGGTCTACCTGTTCACTGTCCGTATCCACGGCGCCTTGGGC
TTC
CTAGGTGGCGTCCTGGTGGCACTCAAGCAAACCATGGGGGACTGTGTGGTCCTGCGAGTGCCCCAGG
TG
CGCGTCAGTGTGATGCCCATGCTGCTGCTGGCGCTGCTGCTCCTGCTGCGGCTCGCCACGCTGCTCCA
G
AGCCCGGCGCTGGCTTCCTATGGCTTCGGGCTGCTCTCCAGTTGGGTATATCTTCGCTTCTACCAGCGC
CAT
AGCCGGGGCCGAGGGGACATGGCTGACCACTTTGCTTTCGCCACTTTCTTCCCTGAGATCCTGCAGC
CT
GTGGTGGGTTTGCTGGCGAACTTGGTGCACAGCCTCCTGGTGAAGGTAAAGATATGCCAGAAGACGGT
G
AAGCGCTACGATGTGGGTGCCCCATCCTCCATCACCATCAGCCTGCCAGGCACAGACCCTCAAGACGCC
GAG
CGGAGAAGGCAACTGGCCCTGAAGGCACTCAATGAGCGGCTGAAGAGAGTGGAAGACCAGTCCATCT
GG
CCCAGCATGGATGATGATGAAGAGGAGTCTGGGGCCAAGGTGGACAGCCCCCTGCCCTCAGACAAAGC
T
CCCACACCCCCAGGGAAGGGGGCTGCCCCAGAATCCAGTCTAATCACCTTCGAGGCAGCTCCCCCGACG
CTG
TAA


Translation (351 aa):
MQRALPGARQHLGAILASASVVVKALCAAVLFLYLLSFAVDTGCLAVTPGYLFPPNFWIWTLATHGLMEQ
H
VWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALG
F
LGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQR
H
SRGRGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDA
E
RR
RQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAPPT
L




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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