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Report for CCDS2573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2573.1 Public Homo sapiens 3 THUMPD3 12 104 71 CCDS HistoryNCBI Gene:25917Re-query CCDS DB by CCDS ID:2573.1Re-query CCDS DB by GeneID:25917

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Sequence IDs included in CCDS 2573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000345094 ENSP00000339532 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345094Link to Ensembl Protein Viewer:ENSP00000339532Re-query CCDS DB by Nucleotide ID:ENST00000345094Re-query CCDS DB by Protein ID:ENSP00000339532
Original member Current member EBI,WTSI ENST00000452837 ENSP00000395893 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452837Link to Ensembl Protein Viewer:ENSP00000395893Re-query CCDS DB by Nucleotide ID:ENST00000452837Re-query CCDS DB by Protein ID:ENSP00000395893
Original member Current member EBI,WTSI ENST00000515662 ENSP00000424064 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515662Link to Ensembl Protein Viewer:ENSP00000424064Re-query CCDS DB by Nucleotide ID:ENST00000515662Re-query CCDS DB by Protein ID:ENSP00000424064
Original member Current member EBI,WTSI OTTHUMT00000214127 OTTHUMP00000122526 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000214127Link to Vega Protein Viewer:OTTHUMP00000122526Re-query CCDS DB by Nucleotide ID:OTTHUMT00000214127Re-query CCDS DB by Protein ID:OTTHUMP00000122526
Original member Current member EBI,WTSI OTTHUMT00000338127 OTTHUMP00000207149 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000338127Link to Vega Protein Viewer:OTTHUMP00000207149Re-query CCDS DB by Nucleotide ID:OTTHUMT00000338127Re-query CCDS DB by Protein ID:OTTHUMP00000207149
Original member Current member EBI,WTSI OTTHUMT00000338128 OTTHUMP00000207150 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000338128Link to Vega Protein Viewer:OTTHUMP00000207150Re-query CCDS DB by Nucleotide ID:OTTHUMT00000338128Re-query CCDS DB by Protein ID:OTTHUMP00000207150
Original member Current member NCBI NM_001114092.1 NP_001107564.1 Accepted alive Link to Nucleotide Sequence:NM_001114092.1Link to Protein Sequence:NP_001107564.1Re-query CCDS DB by Nucleotide ID:NM_001114092Re-query CCDS DB by Protein ID:NP_001107564Link to BLink:NP_001107564.1
Original member Current member NCBI NM_015453.2 NP_056268.2 Accepted alive Link to Nucleotide Sequence:NM_015453.2Link to Protein Sequence:NP_056268.2Re-query CCDS DB by Nucleotide ID:NM_015453Re-query CCDS DB by Protein ID:NP_056268Link to BLink:NP_056268.2

Chromosomal Locations for CCDS 2573.1

Assembly GRCh37.p10 (GCF_000001405.22)

On '+' strand of Chromosome 3 (NC_000003.11)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 3Link to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3

Chromosome Start Stop Links
3 9406753 9407004 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 9408592 9408669 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 9412744 9413220 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 9416200 9416330 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 9419503 9419572 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 9422187 9422302 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 9424883 9424993 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 9425896 9426019 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 9426208 9426372 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGTGTGACATTGAAGAAGCCACTAACCAACTCCTAGATGTGAACCTTCATGAGAACCAGAAGTCTGTAC
AAGTGACAGAAAGTGACCTCGGAAGTGAATCTGAGCTTCTAGTCACTATTGGAGCCACTGTACCTACTGG
CTTTGAGCAAACAGCTGCAGATGAAGTCAGAGAGAAACTTGGGTCATCATGCAAAATCAGCAGAGACCGT
GGCAAGATATATTTTGTCATTTCAGTGGAAAGTCTGGCACAGGTTCATTGTCTGAGATCAGTTGATAACT
TATTTGTGGTGGTTCAGGAGTTTCAAGATTACCAGTTCAAACAAACAAAGGAAGAAGTTCTAAAGGATTT
TGAAGACTTGGCTGGAAAACTCCCATGGTCAAACCCCTTAAAAGTGTGGAAAATTAATGCCAGTTTTAAA
AAGAAAAAAGCAAAGCGCAAAAAGATAAATCAGAATTCAAGTAAAGAGAAGATTAATAATGGACAAGAAG
TCAAAATCGATCAGAGAAATGTTAAAAAAGAGTTCACTAGCCATGCTTTAGATTCTCATATCTTAGATTA
TTATGAAAATCCAGCCATCAAAGAGGATGTATCAACATTAATAGGTGATGATTTGGCATCTTGCAAAGAT
GAGACTGATGAAAGCTCAAAAGAAGAAACTGAGCCTCAAGTGCTGAAGTTTAGAGTCACATGCAACAGGG
CAGGAGAGAAACATTGCTTTACCTCAAATGAGGCTGCAAGAGATTTTGGGGGTGCTGTTCAAGATTATTT
TAAGTGGAAGGCCGACATGACCAACTTTGATGTGGAGGTTCTTTTGAACATCCATGATAATGAAGTCATT
GTGGGCATTGCATTGACTGAAGAGAGTCTCCACCGAAGAAATATAACACATTTTGGACCTACAACTCTTA
GATCAACTCTTGCCTATGGGATGCTCAGGCTCTGTGATCCTCTACCTTATGATATAATAGTCGATCCAAT
GTGTGGAACTGGGGCAATACCAATAGAGGGGGCCACTGAATGGTCTGACTGTTTCCATATTGCTGGTGAT
AATAATCCACTGGCTGTGAATAGAGCAGCAAATAACATTGCATCTTTATTGACCAAGAGCCAAATTAAAG
AAGGCAAACCCTCCTGGGGCTTGCCCATAGATGCTGTTCAGTGGGATATCTGCAATCTGCCATTGAGAAC
TGGCTCTGTGGATATTATTGTAACAGATTTGCCATTTGGAAAAAGGATGGGATCCAAGAAGAGAAACTGG
AACCTTTATCCAGCTTGCCTACGGGAGATGAGCCGTGTCTGCACACCTACCACAGGCCGAGCTGTACTAC
TTACTCAAGACACAAAATGCTTTACCAAGGCGTTATCTGGAATGCGACACGTATGGCGAAAGGTGGATAC
AGTCTGGGTGAACGTTGGTGGTCTTCGTGCTGCAGTTTACGTTCTGATACGTACACCTCAAGCTTTTGTT
CATCCTTCAGAACAAGACGGAGAAAGAGGAACTCTTTGGCAATGCAAAGAATGA

Translation (507 aa):
MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDR
GKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLKVWKINASFK
KKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKD
ETDESSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVI
VGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGD
NNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW
NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLIRTPQAFV
HPSEQDGERGTLWQCKE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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