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Report for CCDS13787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13787.1 Public Homo sapiens 22 THAP7 24 110 108 CCDS HistoryNCBI Gene:80764Re-query CCDS DB by CCDS ID:13787.1Re-query CCDS DB by GeneID:80764See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215742.9 ENSP00000215742.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215742.9Link to Ensembl Protein Viewer:ENSP00000215742.4Re-query CCDS DB by Nucleotide ID:ENST00000215742Re-query CCDS DB by Protein ID:ENSP00000215742
Original member Current member EBI ENST00000399133.2 ENSP00000382084.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399133.2Link to Ensembl Protein Viewer:ENSP00000382084.2Re-query CCDS DB by Nucleotide ID:ENST00000399133Re-query CCDS DB by Protein ID:ENSP00000382084
Original member Current member NCBI NM_001008695.1 NP_001008695.1 Accepted alive Link to Nucleotide Sequence:NM_001008695.1Link to Protein Sequence:NP_001008695.1Re-query CCDS DB by Nucleotide ID:NM_001008695Re-query CCDS DB by Protein ID:NP_001008695Link to BLAST:NP_001008695.1
Original member Current member NCBI NM_030573.3 NP_085050.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030573.3Link to Protein Sequence:NP_085050.2Re-query CCDS DB by Nucleotide ID:NM_030573Re-query CCDS DB by Protein ID:NP_085050Link to BLAST:NP_085050.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008695.1 309 Q9BT49 309 100% 0 0
NP_085050.2 309 Q9BT49 309 100% 0 0

Chromosomal Locations for CCDS 13787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 20999880 21000432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 21000647 21000787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 21001256 21001411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 21001832 21001911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGCCGCGTCACTGCTCCGCCGCCGGCTGCTGCACACGGGACACGCGCGAGACGCGCAACCGCGGCATCT
CCTTCCACAGACTTCCCAAGAAGGACAACCCGAGGCGAGGCTTGTGGCTGGCCAACTGCCAGCGGCTGGA
CCCCAGCGGCCAGGGCCTGTGGGACCCGGCATCCGAGTACATCTACTTCTGCTCCAAACACTTTGAGGAG
GACTGCTTTGAGCTGGTGGGAATCAGTGGATATCACAGGCTAAAGGAGGGGGCAGTCCCCACCATATTTG
AGTCTTTCTCCAAGTTGCGCCGGACAACCAAGACCAAAGGACACAGTTACCCACCTGGCCCCGCTGAAGT
CAGCCGGCTCAGACGATGCAGGAAGCGCTGCTCCGAGGGCCGAGGGCCCACAACTCCATTTTCTCCACCT
CCACCTGCTGATGTCACCTGCTTTCCTGTGGAAGAGGCCTCAGCACCTGCCACTTTGCCGGCCTCCCCAG
CTGGGAGGCTGGAGCCTGGCCTTAGCAGCCCCTTTTCAGACCTACTGGGCCCCTTGGGTGCCCAGGCAGA
TGAAGCAGGCTGCAGCGCCCAGCCTTCACCAGAGCGGCAGCCCTCCCCTCTCGAACCACGGCCAGTCTCC
CCCTCAGCGTATATGCTGCGCCTGCCCCCACCCGCCGGAGCCTACATCCAGAATGAACACAGCTACCAGG
TGGGCAGCGCCTTACTCTGGAAGCGGCGAGCCGAGGCAGCCCTTGATGCCCTTGACAAGGCCCAGCGCCA
GCTGCAGGCCTGCAAGCGGCGGGAGCAGCGGCTGCGGTTGAGACTGACCAAGCTGCAGCAGGAGCGGGCA
CGGGAGAAGCGGGCACAGGCAGATGCCCGCCAGACTCTGAAGGAGCATGTGCAGGACTTTGCCATGCAGC
TGAGCAGCAGCATGGCCTGA

Translation (309 aa):
MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEYIYFCSKHFEE
DCFELVGISGYHRLKEGAVPTIFESFSKLRRTTKTKGHSYPPGPAEVSRLRRCRKRCSEGRGPTTPFSPP
PPADVTCFPVEEASAPATLPASPAGRLEPGLSSPFSDLLGPLGAQADEAGCSAQPSPERQPSPLEPRPVS
PSAYMLRLPPPAGAYIQNEHSYQVGSALLWKRRAEAALDALDKAQRQLQACKRREQRLRLRLTKLQQERA
REKRAQADARQTLKEHVQDFAMQLSSSMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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