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Report for CCDS3818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3818.1 Public Homo sapiens 4 SCRG1 24 110 108 CCDS HistoryNCBI Gene:11341Re-query CCDS DB by CCDS ID:3818.1Re-query CCDS DB by GeneID:11341See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3818.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296506.8 ENSP00000296506.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296506.8Link to Ensembl Protein Viewer:ENSP00000296506.2Re-query CCDS DB by Nucleotide ID:ENST00000296506Re-query CCDS DB by Protein ID:ENSP00000296506
Original member Current member NCBI NM_001329597.2 NP_001316526.1 Accepted alive Link to Nucleotide Sequence:NM_001329597.2Link to Protein Sequence:NP_001316526.1Re-query CCDS DB by Nucleotide ID:NM_001329597Re-query CCDS DB by Protein ID:NP_001316526Link to BLAST:NP_001316526.1
Original member Current member NCBI NM_007281.4 NP_009212.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007281.4Link to Protein Sequence:NP_009212.1Re-query CCDS DB by Nucleotide ID:NM_007281Re-query CCDS DB by Protein ID:NP_009212Link to BLAST:NP_009212.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316526.1 98 O75711 98 100% 0 0
NP_009212.1 98 O75711 98 100% 0 0

Chromosomal Locations for CCDS 3818.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 173388341 173388395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 173391173 173391414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGAAACTGATGGTACTTGTTTTCACCATTGGGCTAACTTTGCTGCTAGGAGTTCAAGCCATGCCTGCAA
AT
CGCCTCTCTTGCTACAGAAAGATACTAAAAGATCACAACTGTCACAACCTTCCGGAAGGAGTAGCTGA
C
CTGACACAGATTGATGTCAATGTCCAGGATCATTTCTGGGATGGGAAGGGATGTGAGATGATCTGTTAC
TGC
AACTTCAGCGAATTGCTCTGCTGCCCAAAAGACGTTTTCTTTGGACCAAAGATCTCTTTCGTGATTC
CT
TGCAACAATCAATGA


Translation (98 aa):
MKLMVLVFTIGLTLLLGVQAMPANRLSCYRKILKDHNCHNLPEGVADLTQIDVNVQDHFWDGKGCEMICY
C
NFSELLCCP
KDVFFGPKISFVIPCNNQ



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser