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Report for CCDS5793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5793.1 Public Homo sapiens 7 POT1 24 110 108 CCDS HistoryNCBI Gene:25913Re-query CCDS DB by CCDS ID:5793.1Re-query CCDS DB by GeneID:25913See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357628.8 ENSP00000350249.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357628.8Link to Ensembl Protein Viewer:ENSP00000350249.3Re-query CCDS DB by Nucleotide ID:ENST00000357628Re-query CCDS DB by Protein ID:ENSP00000350249
Original member Current member EBI ENST00000664366.1 ENSP00000499290.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000664366.1Link to Ensembl Protein Viewer:ENSP00000499290.1Re-query CCDS DB by Nucleotide ID:ENST00000664366Re-query CCDS DB by Protein ID:ENSP00000499290
Original member Current member EBI ENST00000653241.1 ENSP00000499476.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000653241.1Link to Ensembl Protein Viewer:ENSP00000499476.1Re-query CCDS DB by Nucleotide ID:ENST00000653241Re-query CCDS DB by Protein ID:ENSP00000499476
Original member Current member EBI ENST00000668382.1 ENSP00000499546.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000668382.1Link to Ensembl Protein Viewer:ENSP00000499546.1Re-query CCDS DB by Nucleotide ID:ENST00000668382Re-query CCDS DB by Protein ID:ENSP00000499546
Original member Current member EBI ENST00000655761.1 ENSP00000499635.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000655761.1Link to Ensembl Protein Viewer:ENSP00000499635.1Re-query CCDS DB by Nucleotide ID:ENST00000655761Re-query CCDS DB by Protein ID:ENSP00000499635
Original member Current member NCBI NM_015450.3 NP_056265.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015450.3Link to Protein Sequence:NP_056265.2Re-query CCDS DB by Nucleotide ID:NM_015450Re-query CCDS DB by Protein ID:NP_056265Link to BLAST:NP_056265.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056265.2 634 Q9NUX5-1 634 100% 0 0

Chromosomal Locations for CCDS 5793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 124823962 124824074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124825252 124825357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124827214 124827305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124829254 124829342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124835279 124835414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124840973 124841178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124842807 124842963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124846942 124846998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124851872 124851951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124852972 124853138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124858957 124859112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124863350 124863640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124870911 124871041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124892266 124892380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 124897165 124897173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGTCTTTGGTTCCAGCAACAAATTATATATATACACCCCTGAATCAACTTAAGGGTGGTACAATTGTCA
ATGTCTATGGTGTTGTGAAGTTCTTTAAGCCCCCATATCTAAGCAAAGGAACTGATTATTGCTCAGTTGT
AACTATTGTGGACCAGACAAATGTAAAACTAACTTGCCTGCTCTTTAGTGGAAACTATGAAGCCCTTCCA
ATAATTTATAAAAATGGAGATATTGTTCGCTTTCACAGGCTGAAGATTCAAGTATATAAAAAGGAGACTC
AGGGTATCACCAGCTCTGGCTTTGCATCTTTGACGTTTGAGGGAACTTTGGGAGCCCCTATCATACCTCG
CACTTCAAGCAAGTATTTTAACTTCACTACTGAGGACCACAAAATGGTAGAAGCCTTACGTGTTTGGGCA
TCTACTCATATGTCACCGTCTTGGACATTACTAAAATTGTGTGATGTTCAGCCAATGCAGTATTTTGACC
TGACTTGTCAGCTCTTGGGCAAAGCAGAAGTGGACGGAGCATCATTTCTTCTAAAGGTATGGGATGGCAC
CAGGACACCATTTCCATCTTGGAGAGTCTTAATACAAGACCTTGTTCTTGAAGGTGATTTAAGTCACATC
CATCGGCTACAAAATCTGACAATAGACATTTTAGTCTACGATAACCATGTTCATGTGGCAAGATCTCTGA
AGGTTGGAAGCTTTCTTAGAATCTATAGCCTTCATACCAAACTTCAATCAATGAATTCAGAGAATCAGAC
AATGTTAAGTTTAGAGTTTCATCTTCATGGAGGTACCAGTTACGGTCGGGGAATCAGGGTCTTGCCAGAA
AGTAACTCTGATGTGGATCAACTGAAAAAGGATTTAGAATCTGCAAATTTGACAGCCAATCAGCATTCAG
ATGTTATCTGTCAATCAGAACCTGACGACAGCTTTCCAAGCTCTGGATCAGTATCATTATACGAGGTAGA
AAGATGTCAACAGCTATCTGCTACAATACTTACAGATCATCAGTATTTGGAGAGGACACCACTATGTGCC
ATTTTGAAACAAAAAGCTCCTCAACAATACCGCATCCGAGCAAAATTGAGGTCATATAAGCCCAGAAGAC
TATTTCAGTCTGTTAAACTTCATTGCCCTAAATGTCATTTGCTGCAAGAAGTTCCACATGAGGGCGATTT
GGATATAATTTTTCAGGATGGTGCAACTAAAACCCCAGATGTCAAGCTACAAAATACATCATTATATGAT
TCAAAAATCTGGACCACTAAAAATCAAAAAGGACGAAAAGTAGCAGTTCATTTTGTGAAAAATAATGGTA
TTCTCCCGCTTTCAAATGAATGTCTACTTTTGATAGAAGGAGGTACACTCAGTGAAATTTGCAAACTCTC
GAACAAGTTTAATAGTGTAATTCCTGTGAGATCTGGCCACGAAGACCTGGAACTTTTGGACCTTTCAGCA
CCATTTCTTATACAAGGAACAATACATCACTATGGATGTAAACAGTGTTCTAGTTTGAGATCCATACAAA
ATCTAAATTCCCTGGTTGATAAAACATCGTGGATTCCTTCTTCTGTGGCAGAAGCACTGGGTATTGTACC
CCTCCAATATGTGTTTGTTATGACCTTTACACTTGATGATGGAACAGGAGTACTAGAAGCCTATCTCATG
GATTCTGACAAATTCTTCCAGATTCCAGCATCAGAAGTTCTGATGGATGATGACCTTCAGAAAAGTGTGG
ATATGATCATGGATATGTTTTGTCCTCCAGGAATAAAAATTGATGCATATCCGTGGTTGGAATGCTTCAT
CAAGTCATACAATGTCACAAATGGAACAGATAATCAAATTTGCTATCAGATTTTTGACACCACAGTTGCA
GAAGATGTAATCTAA

Translation (634 aa):
MSLVPATNYIYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALP
IIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWA
STHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHI
HRLQNLTIDILVYDNHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPE
SNSDVDQLKKDLESANLTANQHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCA
ILKQKAPQQYRIRAKLRSYKPRRLFQSVKLHCPKCHLLQEVPHEGDLDIIFQDGATKTPDVKLQNTSLYD
SKIWTTKNQKGRKVAVHFVKNNGILPLSNECLLLIEGGTLSEICKLSNKFNSVIPVRSGHEDLELLDLSA
PFLIQGTIHHYGCKQCSSLRSIQNLNSLVDKTSWIPSSVAEALGIVPLQYVFVMTFTLDDGTGVLEAYLM
DSDKFFQIPASEVLMDDDLQKSVDMIMDMFCPPGIKIDAYPWLECFIKSYNVTNGTDNQICYQIFDTTVA
EDVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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