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Report for CCDS41611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41611.1 Public Homo sapiens 11 OR52B6 24 110 108 CCDS HistoryNCBI Gene:340980Re-query CCDS DB by CCDS ID:41611.1Re-query CCDS DB by GeneID:340980See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41611.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345043.2 ENSP00000341581.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345043.2Link to Ensembl Protein Viewer:ENSP00000341581.2Re-query CCDS DB by Nucleotide ID:ENST00000345043Re-query CCDS DB by Protein ID:ENSP00000341581
Original member Current member NCBI NM_001005162.2 NP_001005162.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005162.2Link to Protein Sequence:NP_001005162.2Re-query CCDS DB by Nucleotide ID:NM_001005162Re-query CCDS DB by Protein ID:NP_001005162Link to BLAST:NP_001005162.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005162.2 335 Q8NGF0 335 100% 0 0

Chromosomal Locations for CCDS 41611.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5580877 5581884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCACAGGTGAGGGCGCTGCATAAAATCATGGCCCTTTTTTCTGCTAACAGCATAGGTGCTATGAACA
AC
TCTGACACTCGCATAGCAGGCTGCTTCCTCACTGGCATCCCTGGGCTGGAGCAACTACATATCTGGCT
G
TCCATCCCCTTCTGCATCATGTACATCACTGCCCTGGAAGGCAATGGCATCCTAATTTGTGTCATCCTC
TCC
CAGGCAATCCTGCATGAGCCCATGTACATATTCTTATCTATGCTGGCCAGTGCTGATGTCTTGCTCT
CT
ACCACCACCATGCCTAAGGCCCTGGCCAATTTGTGGCTAGGTTATAGCCTCATTTCCTTTGATGGCTG
C
CTCACTCAGATGTTCTTCATTCACTTCCTCTTCATTCACTCTGCTGTCCTGCTGGCCATGGCCTTTGAC
CGC
TATGTGGCCATCTGCTCCCCCCTGCGATATGTCACAATCCTCACAAGCAAGGTCATTGGGAAGATCG
TC
ACTGCCGCCCTGAGCCACAGCTTCATCATTATGTTTCCATCCATCTTTCTCCTTGAGCACCTGCACTA
T
TGCCAGATCAATATCATTGCACACACATTTTGTGAGCACATGGGCATTGCCCATCTGTCCTGTTCTGAT
ATC
TCCATCAATGTCTGGTATGGGTTGGCAGCTGCTCTTCTCTCCACAGGCCTAGACATCATGCTTATTA
CT
GTTTCCTACATCCACATCCTCCAAGCAGTCTTCCGCCTCCTTTCTCAAGATGCCCGCTCCAAGGCCCT
G
AGTACCTGTGGATCCCATATCTGTGTCATCCTACTCTTCTATGTCCCTGCGCTTTTTTCTGTCTTTGCC
TAC
AGGTTTGGTGGGAGAAGCGTCCCATGCTATGTCCATATTCTCCTGGCCAGCCTCTACGTTGTCATTC
CT
CCTATGCTCAATCCCGTTATTTATGGAGTGAGGACTAAGCCAATACTGGAAGGGGCTAAGCAGATGTT
T
TCAAATCTTGCCAAAGGATCTAAATAA


Translation (335 aa):
MAQVRALHKIMALFSANSIGAMNNSDTRIAGCFLTGIPGLEQLHIWLSIPFCIMYITALEGNGILICVIL
S
QAILHEPMYIFLSMLASADVLLSTTTMPKALANLWLGYSLISFDGCLTQMFFIHFLFIHSAVLLAMAFD
R
YVAICSPLRYVTILTSKVIGKIVTAALSHSFIIMFPSIFLLEHLHYCQINIIAHTFCEHMGIAHLSCSD
I
SINVWYGLAAALLSTGLDIMLITVSYIHILQAVFRLLSQDARSKALSTCGSHICVILLFYVPALFSVFA
Y
RFGGRSVPCYVHILLASLYVVIPPMLNPVIYGVRTKPILEGAKQMFSNLAKGSK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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