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Report for CCDS81963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81963.1 Public Homo sapiens 16 NPIPB8 24 110 108 CCDS HistoryNCBI Gene:728734Re-query CCDS DB by CCDS ID:81963.1Re-query CCDS DB by GeneID:728734See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81963.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529716.5 ENSP00000434399.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529716.5Link to Ensembl Protein Viewer:ENSP00000434399.1Re-query CCDS DB by Nucleotide ID:ENST00000529716Re-query CCDS DB by Protein ID:ENSP00000434399
Original member Current member EBI ENST00000683297.1 ENSP00000507410.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683297.1Link to Ensembl Protein Viewer:ENSP00000507410.1Re-query CCDS DB by Nucleotide ID:ENST00000683297Re-query CCDS DB by Protein ID:ENSP00000507410
Original member Current member NCBI NM_001310136.2 NP_001297065.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001310136.2Link to Protein Sequence:NP_001297065.1Re-query CCDS DB by Nucleotide ID:NM_001310136Re-query CCDS DB by Protein ID:NP_001297065Link to BLAST:NP_001297065.1
Original member Current member NCBI NM_001385922.1 NP_001372851.1 Accepted alive Link to Nucleotide Sequence:NM_001385922.1Link to Protein Sequence:NP_001372851.1Re-query CCDS DB by Nucleotide ID:NM_001385922Re-query CCDS DB by Protein ID:NP_001372851Link to BLAST:NP_001372851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297065.1 432 E9PQR5 432 100% 0 0
NP_001372851.1 432 E9PQR5 432 100% 0 0

Chromosomal Locations for CCDS 81963.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28638361 28638480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28648135 28648317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28651957 28652056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28652169 28652364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28656463 28656523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28656633 28656668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28658028 28658630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGTGAAGCTCTCTATTGTCCTGACCCCACAGTTCCTGTCCCATGACCAGGGCCAGCTCACCAAGGAGC
TG
CAGCAGCATGTAAAGTCAGTGACATGCCCATGCGAGTACCTGAGGAAGGTTATCAATAGTCTGGCTGT
C
TATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCAACATGGCAAAACCCCA
TCT
CCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGATGTTACACATTTAACATTC
TC
TTCTGCACAAGTTGCCTTTGTGTGTCTTTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGATGG
A
TCCATGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCAGTAGACAGAAAGGGCTGAGGTCCATTTGT
ATG
CACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAAGACGTCATTACTCTAC
GG
AGGCATGTGGAAACAAAAGTTAGAGCTAAAATCCGTAAGAGGAAGGTGACAACGAAAATCAACCGTCA
T
GACAAAATCAATGGAAAGAGGAAGACCGCCAGAAAACAGAAAATGTTTCAACGTGCGCAAGAGTTGCGG
CGG
CGGGCAGAGGACTACCACAAATGCAAAATCCCCCCTTCTGCAAGAAAGCCTCTTTGCAACTGGGTCA
GA
ATGGCGGCAGCGGAGCATCGTCATTCTTCAGGATTGCCCTACTGGCTCTACCTCACAGCTGAAACTTT
A
AAAAACAGGATGGGCCGCCAGCCACCTCCTCCAACTCAACAACATTCTATAACTGATAACTCCCTGAGC
CTC
AAGACACCTCCTGAGTGTCTGCTCACTCCCCTTCCACCCTCAGTGGATGATAATATCAAGGAGTGTC
CT
CTTGCTCCTCTTCCACCCTCTCCTCTTCCACCCTCAGTGGATGATAATCTGAAGGAATGTCTCTTTGT
C
CCGCTTCCACCCTCTCCTCTTCCACCCTCAGTGGATGATAATCTGAAGGAATGTCTCTTTGTCCCGCTT
CCA
CCCTCTCCTCTTCCACCCTCAGTGGATGATAATCTCAAGACTCCTCCCTTAGCTACTCAGGAGGCCG
AG
GTGGAAAAACCACCCAAACCCAAGAGGTGGAGGGTGGATGAGGTGGAACAATCGCCCAAGCCCAAGAG
G
CAGAGGGAGGCCGAGGCACAACAATTACCCAAACCCAAGAGGCGGAGGTTGAGTAAGCTGAGAACACGC
CAT
TGCACTCAAGCCTGGGCAATAAGAATAAATCCGTAG


Translation (432 aa):
MVKLSIVLTPQFLSHDQGQLTKELQQHVKSVTCPCEYLRKVINSLAVYRHRETDFGVGVRDHPGQHGKTP
S
PQKLDNLIIIIIGFLRCYTFNILFCTSCLC
VSFLKTIFWSRNGHDGSMDVQQRAWRSNRSRQKGLRSIC
M
HTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARK
QKMFQRAQELR
R
RAEDYHKCK
IPPSARKPLCNWVRMAAAEHRHSSGLPYWLYLTAETLKNRMGRQPPPPTQQHSITDNSLS
L
KTPPECLLTPLPPSVDDNIKECPLAPLPPSPLPPSVDDNLKECLFVPLPPSPLPPSVDDNLKECLFVPL
P
PSPLPPSVDDNLKTPPLATQEAEVEKPPKPKRWRVDEVEQSPKPKRQREAEAQQLPKPKRRRLSKLRTR
H
CTQAWAIRINP




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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