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Report for CCDS33806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33806.1 Public Homo sapiens 3 NIT2 24 110 108 CCDS HistoryNCBI Gene:56954Re-query CCDS DB by CCDS ID:33806.1Re-query CCDS DB by GeneID:56954See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33806.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394140.9 ENSP00000377696.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394140.9Link to Ensembl Protein Viewer:ENSP00000377696.3Re-query CCDS DB by Nucleotide ID:ENST00000394140Re-query CCDS DB by Protein ID:ENSP00000377696
Original member Current member NCBI NM_020202.5 NP_064587.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020202.5Link to Protein Sequence:NP_064587.1Re-query CCDS DB by Nucleotide ID:NM_020202Re-query CCDS DB by Protein ID:NP_064587Link to BLAST:NP_064587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064587.1 276 Q9NQR4 276 100% 0 0

Chromosomal Locations for CCDS 33806.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100334792 100334798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100339087 100339205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100339815 100339935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100341073 100341161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100345585 100345678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100346181 100346255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100348803 100348881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100352404 100352502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100354772 100354827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100355177 100355268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGACCTCTTTCCGCTTGGCCCTCATCCAGCTTCAGATTTCTTCCATCAAATCAGATAACGTCACTCGCG
CTTGTAGCTTCATCCGGGAGGCAGCAACGCAAGGAGCCAAAATAGTTTCTTTGCCGGAATGCTTTAATTC
TCCATATGGAGCGAAATATTTTCCTGAATATGCAGAGAAAATTCCTGGTGAATCCACACAGAAGCTTTCT
GAAGTAGCAAAGGAATGCAGCATATATCTCATTGGAGGCTCTATCCCTGAAGAGGATGCTGGGAAATTAT
ATAACACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAAAGTATAGAAAGATCCATCTGTTTGA
CATTGATGTTCCTGGAAAAATTACATTTCAAGAATCTAAAACATTGAGTCCGGGTGATAGTTTCTCCACA
TTTGATACTCCTTACTGCAGAGTGGGTCTGGGCATCTGCTACGACATGCGGTTTGCAGAGCTTGCACAAA
TCTACGCACAGAGAGGCTGCCAGCTGTTGGTATATCCAGGAGCTTTTAATCTGACCACTGGACCAGCCCA
TTGGGAGTTACTTCAGCGAAGCCGGGCTGTTGATAATCAGGTGTATGTGGCCACAGCCTCTCCTGCCCGG
GATGACAAAGCCTCCTATGTTGCCTGGGGACACAGCACCGTGGTGAACCCTTGGGGGGAGGTTCTAGCCA
AAGCTGGCACAGAAGAAGCAATCGTGTATTCAGACATAGACCTGAAGAAGCTGGCTGAAATACGCCAGCA
AATCCCCGTTTTTAGACAGAAGCGATCAGACCTCTATGCTGTGGAGATGAAAAAGCCCTAA

Translation (276 aa):
MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKIPGESTQKLS
EVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFST
FDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRSRAVDNQVYVATASPAR
DDKASYVAWGHSTVVNPWGEVLAKAGTEEAIVYSDIDLKKLAEIRQQIPVFRQKRSDLYAVEMKKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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