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Report for CCDS44878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44878.1 Public Homo sapiens 12 FAM186A 24 110 108 CCDS HistoryNCBI Gene:121006Re-query CCDS DB by CCDS ID:44878.1Re-query CCDS DB by GeneID:121006See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 44878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327337.6 ENSP00000329995.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327337.6Link to Ensembl Protein Viewer:ENSP00000329995.5Re-query CCDS DB by Nucleotide ID:ENST00000327337Re-query CCDS DB by Protein ID:ENSP00000329995
Original member Current member NCBI NM_001145475.3 NP_001138947.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145475.3Link to Protein Sequence:NP_001138947.1Re-query CCDS DB by Nucleotide ID:NM_001145475Re-query CCDS DB by Protein ID:NP_001138947Link to BLAST:NP_001138947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138947.1 2351 A6NE01 2351 100% 0 0

Chromosomal Locations for CCDS 44878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 50327383 50327404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50330573 50330758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50331670 50331821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50333911 50334103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50350329 50356248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50360756 50360926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50363145 50363364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50396293 50396484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (7056 nt):
ATGTTCTTCAAAATGAAAAATGAGATAGACAATGACCCTGAATCAGAAAAATGCATCAAGGATTCCACCA
TCATGAGAAGAGAGCCCCAAAATATCCTTAGTCCTTTGATGCTCCCTAACCTTGAGATCCCATTCTCAGT
AAAGGATATCATCTCTAGGATTGAGCGCGCACAGCTCCATCGAGCCAGAGAGGACATTGATATGCAGCTG
AGTGAAATAATGAACAATGTGCATCGGATAATGACTCGCTATACTCTTGTTTTTAACTCGTCCTCTGAAA
GGAATGTCTCCCTTACAGAACATAAGAAAAAACAGAGAACCAATTTTCTTGAGAAAATGGCTACTTACGC
TAAGACTATTGAAATAAGAGAAAAGACTCTTGCCAACATTCTGGCCTGGTTGGAAGAATGGAATGATGTT
TTGTCTGAGATGACTCTAATGGATGTTGATGAACACCACCACTGGATAGCACAAATGGAGTTGTTACCGG
ACACGTTAAAAGCTATTGAGAACAATGTCAAGATACTAAGCAGATTTAGTACATCTTTCCTCGACGAAAA
GAAGAAACAAAAGAAAAAAATATTATCTAGAGGTACTCTATGGAAATCTTGGAAAGAAAGAGTTATAAAA
CGACCTTCAACAGCCCGTGCTTTAAGACCAGATCAGATGATTAGTGATCAACTTGCAACAAATACAAAGG
TTTCAGAAATCCAAGGTATGCTACAGGAACTCATAGGCACCACAATGTTCAGTACATTGGAAAACAATGC
TATTAAATATATATCATCAACAATAGTAAACCTTTCTACAGCTTTGAGTATGCTAAATGATGAATTAAAA
TGTGTTAACTTCCAAAGTTCCACTGTGTATGCACATGAGACAAGTGAAGCAGAAAAGGAGCTCTCTCTGA
AGATAATACGAGATCTCAGTAACGAAAATGAAATGCTTCAGCAGAAACTTCAAGATGCAGAAGAAAAATG
TGAACAACTTATTCGATCCAAAATTGTTATAGAACAACTATATGCAAAATTGTCCACATCATCAACCTTG
AAAGTGTTACCTGGACCTTCTCCACAGTCATCCAGGGCGATAATCAAAGTTGGTGATACTGAGGACAATA
TGGACAATATTTTAGACAAGGAACTTGAAAATATTGTAGATGAAGTCCAAAGAAAAGAGACCAAGGACTC
TGGGATAAAATGGGACTCCACTATTTCATATACAGCCCAAGCTGAAAGAACTCCAGATTTAACTGAACTA
CGACAGCAACCTGTTGCTTCTGAAGATATTTCCGAAGACAGCACTAAAGATAACGTATCATTGAAGAAAG
GTGATTTCTATCAGGAAGATGAGACTGATGAGTATCAATCATGGAAAAGAAGCCACAAAAAAGCCACATA
TGTATATGAGACCTCTGGACCAAATCTGAGTGATAATAAAAGTGGACAGAAAGTCTCAGAGGCCAAACCT
AGTCAATACTATGAGCTACAAGTACTGAAAAAGAAAAGAAAAGAAATGAAATCCTTTTCTGAAGATAAAT
CAAAGTCACCCACTGAAGCAAAAAGAAAACATCTCTCTTTAACTGAAACAAAGAGCCAAGGTGGCAAAAG
TGGAACAAGTATGATGATGTTGGAGCAATTTAGGAAGGTCAAACGTGAATCTCCATTTGACAAACGTCCA
ACTGCAGCAGAGATTAAAGTGGAACCCACCACTGAGTCATTGGACAAAGAGGGCAAAGGTGAAATTAGAA
GCCTAGTGGAGCCACTCAGTATGATCCAATTTGATGATACTGCTGAGCCACAGAAAGGAAAAATAAAAGG
AAAGAAACACCATATCTCTTCAGGAACTATCACAAGCAAAGAAGAAAAAACTGAAGAGAAGGAAGAGTTG
ACCAAACAAGTCAAGTCTCATCAACTTGTTAAATCACTCTCAAGAGTGGCTAAAGAGACTTCAGAATCTA
CCAGAGTTCTAGAAAGTCCAGATGGCAAAAGTGAACAGAGTAACCTCGAAGAATTTCAGGAAGCCATAAT
GGCTTTCCTAAAACAGAAAATTGATAACATAGGAAAGGCTTTTGACAAAAAGACTGTTCCGAAGGAAGAG
GAGTTATTAAAAAGAGCAGAAGCTGAAAAATTAGGAATCATAAAGGCAAAAATGGAGGAATATTTCCAAA
AAGTGGCTGAAACTGTGACTAAAATCTTGAGAAAATACAAAGATACAAAAAAGGAAGAACAAGTTGGAGA
GAAACCTATAAAACAAAAAAAGGTAGTCTCATTTATGCCAGGATTGCATTTTCAGAAGTCACCAATTAGT
GCAAAATCTGAAAGCAGTACCCTCCTCTCATATGAGAGCACAGATCCAGTAATTAACAATTTAATACAAA
TGATCTTGGCTGAAATAGAAAGTGAAAGAGATATTCCAACAGTCTCAACAGTACAGAAAGACCACAAGGA
GAAGGAAAAACAAAGGCAGGAGCAATATTTGCAAGAGGGTCAAGAACAAATGTCTGGCATGAGTCTCAAA
CAGCAGTTGCTGGGAGAAAGAAATCTCTTGAAGGAGCACTATGAGAAGATAAGTGAGAATTGGGAAGAAA
AAAAGGCATGGCTCCAGATGAAGGAGGGAAAGCAAGAACAACAGAGCCAGAAACAGTGGCAGGAAGAAGA
GATGTGGAAGGAAGAGCAAAAACAGGCAACTCCAAAGCAGGCTGAGCAAGAGGAAAAGCAAAAGCAAAGA
GGACAGGAGGAAGAAGAGCTTCCAAAGTCAAGCCTGCAGCGGCTGGAAGAAGGGACCCAAAAAATGAAAA
CACAAGGGTTGCTCTTGGAAAAGGAGAATGGACAGATGAGGCAGATTCAGAAGGAAGCGAAACATTTGGG
GCCACACAGGAGAAGGGAGAAAGGGAAGGAAAAGCAGAAGCCAGAGAGAGGGCTAGAGGACCTCGAAAGG
CAGATCAAAACAAAGGATCAGATGCAGATGAAGGAAACACAACCTAAAGAGCTAGAAAAAATGGTCATCC
AAACTCCAATGACATTATCTCCCAGGTGGAAGAGTGTATTGAAAGATGTACAGCGGTCATATGAAGGAAA
AGAGTTTCAGAGGAATCTGAAGACATTAGAGAACCTTCCTGATGAAAAGGAGCCCATATCAATCACACCT
CCCCCCTCCCTACAATACTCCCTGCCTGGAGCTCTTCCTATTTCTGGCCAGCCTCTCACTAAATGCATTC
ATCTCACACCTCAGCAGGCCCAGGAAGTGGGGATCACACTCACTCCTCAGCAGGCCCAGGCTCAGGGGAT
CACGCTCACCCTTCAGCAGGCCCAGGAACTAGGGATCCCTCTCACCCCTCAGCAGGCCCAGGCCCTGGAG
ATCCTTTTCACCCCTCAGCAGGCGCAGGCCCTGGGGATCCCTCTCACCCCTCAGCAGACCCAGGTTCAAG
GGATCACTCTCACCCCTCAGCAGGACCAGGCCCCGGGGATCTCTCTCACCACTCAGCAGGCTCAGAAACT
AGGGATCCCTCTTACCCCTCAGCAGGCCCAGGCCCTGGGGATCCCTCTCACCCCTCAGCAGGCTCAGGAA
TTGGGGATCCCTCTCACCCCTCAGCAGGCCCAGGCCCTGAGGGTCTCTCTCACCCCTCAGCAGGCTCAGG
AATTGGGGATCCCTCTCACCCCTCAGCAGGCCCAGGCCCTGGGGATCACTCTAACCCTTCAGCAGGCCCA
GCAATTGGGGATCCCTCTCACCCCTCAGCAGGCGCAGGCTCTCGGAATCACTCTCACCCCTAAGCAGGTT
CAGGAACTGGGGATCCCTCTTACTCCTCAGCAGGCCCAGGCCCTGGGGATCACTCTCACCCCTAAGCAGG
CTCAGGAATTGGGGATCCCTCTCAACCCTCAGCAGGCCCAGACCCTGGGGATCCCTCTCACCCCTAAGCA
GGCACAGGCTCTGGGGATCCCTTTCACCCCTCAGCAGGCGCAGGCCCTGGGGATCCCTCTCACCCCTCAG
CAGGCGCAGACTCAGGAGATCACTCTCACCCCTCAGCAGGCCCAGGCCTTGGGGATGCCTCTCACCACTC
AGCAGGCTCAGGAACTGGGGATCCCTCTCACCCCTCAGCACGCTCAGGCCTTGGGGATGCCTCTCACCAC
TCAGCAGGCTCAGGAACTGGGGATCCCTCTCACCCCTCAGCAGGCTCAGGCCTTGGGGATGCCTCTCACC
ACTCAGCAGGCTCAGGAACTGGGGATCCCTCTCACCCCTCAGCAGGCTCAGGAATTGGGGATCCCTTTCA
CCCCTCAGCAGGCACAGGCTCAGGAGATCACTCTCACCCCTCAGCAGGCCCAGGCCCTGGGGATGCCTCT
CACCGCTCAGCAGGCTCAGGAGCTGGGGATCACTCTCACCCCTCAGCAGGCTCAGGAATTGGGGATCCCT
CTCACCCCTCAGCAGGCCCAGGCCCTGGGGATCCCTCTCATCCCTCCGCAGGCTCAGGAATTGGGGATCC
CTCTCACCCCTCAGCAGGCCCAGGCCCTGGGGATCCTTCTCATCCCTCCGCAGGCTCAGGAATTGGGGAT
CCCTCTCACCCCTCAGCAGGCCCAGGCCCTGGGGATCCCTCTGATCCCTCCGCAGGCTCAGGAATTGGGG
ATCCCTCTCACCCCTCAGCAGGTCCAGGCCCTGGGGATCCCTCTCATCCCTCCGCAGGCTCAGGAATTGG
AGATCCCTCTCACCCCTCAGCAGGCCCAGGCCCTGGGGATCCCTCTCACCCCTCAGCAGGCGCAGGAACT
GGGGATCCCTCTCACCCCTCAGCAGGCGCAGGAACTGGGGATCCCTCTCACCCCTCAGCAGGCGCAGGCT
CAGGGGATCCCTCTCACCCCTCAGCAGGCCCAGGCTCTGGGGATCTCTCTCACCCCTCAGCAGGCGCAGG
CTCAGGGGATCACTCTCACCCCTCAGCAGGCCCAGGCACTGGGAGTCCCCATCACCCCAGTAAATGCCTG
GGTGTCAGCTGTCACTCTTACCTCTGAGCAAACCCACGCTTTGGAGTCCCCTATGAACTTAGAACAGGCT
CAAGAACAGTTATTGAAGTTAGGGGTTCCTCTCACCTTAGATAAAGCCCATACCTTGGGATCGCCCCTCA
CCCTTAAGCAAGTCCAGTGGTCCCATAGACCATTTCAGAAATCGAAGGCTTCTCTCCCCACTGGGCAATC
CATCATATCAAGATTGTCTCCAAGTCTTAGGCTGTCCCTGGCATCATCAGCTCCTACTGCTGAGAAGTCC
TCTATATTCGGGGTCTCTTCTACTCCTTTGCAGATATCAAGGGTTCCCCTCAACCAAGGCCCCTTTGCCC
CTGGGAAGCCCCTAGAAATGGGGATTCTTTCTGAGCCTGGGAAGCTTGGGGCACCACAGACTCTTCGTTC
CTCTGGACAGACCCTGGTATACGGAGGTCAATCCACTTCTGCGCAGTTCCCGGCACCACAGGCCCCTCCC
TCCCCTGGGCAGCTCCCAATATCTCGGGCCCCTCCCACTCCAGGGCAGCCCTTTATAGCTGGAGTTCCAC
CCACTTCTGGACAGATTCCAAGTCTCTGGGCTCCTCTTTCTCCTGGGCAGCCCTTAGTTCCTGAAGCCTC
TTCCATCCCTGGGGACCTCCTGGAATCTGGACCCTTAACCTTCTCTGAGCAGCTCCAGGAATTCCAGCCT
CCTGCCACTGCTGAGCAATCTCCCTATCTGCAGGCTCCTTCTACCCCTGGGCAGCATCTGGCAACATGGA
CCCTTCCTGGGCGAGCTTCTTCATTATGGATCCCTCCCACCTCTAGACATCCTCCCACACTATGGCCGTC
CCCAGCCCCTGGAAAGCCCCAGAAAAGTTGGTCCCCTTCTGTTGCTAAGAAAAGATTGGCAATTATTTCT
TCTCTGAAATCTAAATCAGTATTGATCCATCCTAGTGCTCCAGATTTCAAGGTAGCTCAAGTTCCTTTCA
CCACTAAGAAGTTCCAAATGTCGGAGGTCTCTGACACTTCCGAAGAAACCCAGATACTTCGAGACACTTT
TGCTATAGAATCATTTAGAACATTTCAGTCCCATTTCACCAAATATAGGACACCAGTATACCAAACCCCT
TACACTGATGAAAGGGCCCTTCTCACTCTCATGAAGCCAACAACATCACCATCTTCTCTCACTACTCTAC
TCAGAACATCACAGATTTCACCTTTGGAATGGTACCAGAAATCCCGATTCCCTCCTATAGACAAGCCCTG
GATACTGAGTTCAGTTTCAGATACCAAGAAACCCAAAGTAATGGTGCCCCCTTCCTCTCCTCAAGAACTT
GAAGAAAAGAGGTATTTTGTTGATGTGGAGGCTCAGAAGAAGAACCTGATACTATTAAATCAGGCTATAA
AAACTTGTGGACTCCCTTCACAGCTACACACAATGGCTAGGACTCTCATAATTGAGATACTTCATATGGA
CACAGTTCAGTTGGGATACTTATTCCGCAAGTACATTGCCTATAGGCTGATCCAGCATGCCAGGAACAAC
ATAATGAAACGACTAAAAGCCATCCAAAATACTGGGAAAGGCTATGAGGCCAGGAACCTCCACATGATGC
TGAGCAGACTTGATGACTACGGGAAAAAGGTGATGCAGGTCTGGACTGAGAAGCAGAAGTCTCTAGGGCA
GAAACGGAATCAGTGCCTGAAGAAAATGATACACGTATTCAACCAGCTCAAAAAGATACATGAATTGAAT
CTTAGTCAACCTATCCCCTTAATCATCGAAGAAAAGCAGATACCTGCCTCTACCACATTTGTTCAAAAGC
CATTCTTAAAATTACTAATGGAAGAGGACAGAACCTCTGACATATGCAAGAAATTTAGGCAACAAGAGGA
CCAGACAGAGGCCATCTGGAATGTTGATCTGTCCACTTCAAGCTACCCAATAGCAGAGAAGACATCTATG
CATTCACTCTGGGCCCAGCTGGGTGGGTACCCAGATATTCCCAGGCTGCTTCAGTTAGAAGTGCAGTCTA
CCTTCCGAAAATCTCTTGCATCCCTCCAATCACGGGTTAAGAAGATTCCCAAATGA

Translation (2351 aa):
MFFKMKNEIDNDPESEKCIKDSTIMRREPQNILSPLMLPNLEIPFSVKDIISRIERAQLHRAREDIDMQL
SEIMNNVHRIMTRYTLVFNSSSERNVSLTEHKKKQRTNFLEKMATYAKTIEIREKTLANILAWLEEWNDV
LSEMTLMDVDEHHHWIAQMELLPDTLKAIENNVKILSRFSTSFLDEKKKQKKKILSRGTLWKSWKERVIK
RPSTARALRPDQMISDQLATNTKVSEIQGMLQELIGTTMFSTLENNAIKYISSTIVNLSTALSMLNDELK
CVNFQSSTVYAHETSEAEKELSLKIIRDLSNENEMLQQKLQDAEEKCEQLIRSKIVIEQLYAKLSTSSTL
KVLPGPSPQSSRAIIKVGDTEDNMDNILDKELENIVDEVQRKETKDSGIKWDSTISYTAQAERTPDLTEL
RQQPVASEDISEDSTKDNVSLKKGDFYQEDETDEYQSWKRSHKKATYVYETSGPNLSDNKSGQKVSEAKP
SQYYELQVLKKKRKEMKSFSEDKSKSPTEAKRKHLSLTETKSQGGKSGTSMMMLEQFRKVKRESPFDKRP
TAAEIKVEPTTESLDKEGKGEIRSLVEPLSMIQFDDTAEPQKGKIKGKKHHISSGTITSKEEKTEEKEEL
TKQVKSHQLVKSLSRVAKETSESTRVLESPDGKSEQSNLEEFQEAIMAFLKQKIDNIGKAFDKKTVPKEE
ELLKRAEAEKLGIIKAKMEEYFQKVAETVTKILRKYKDTKKEEQVGEKPIKQKKVVSFMPGLHFQKSPIS
AKSESSTLLSYESTDPVINNLIQMILAEIESERDIPTVSTVQKDHKEKEKQRQEQYLQEGQEQMSGMSLK
QQLLGERNLLKEHYEKISENWEEKKAWLQMKEGKQEQQSQKQWQEEEMWKEEQKQATPKQAEQEEKQKQR
GQEEEELPKSSLQRLEEGTQKMKTQGLLLEKENGQMRQIQKEAKHLGPHRRREKGKEKQKPERGLEDLER
QIKTKDQMQMKETQPKELEKMVIQTPMTLSPRWKSVLKDVQRSYEGKEFQRNLKTLENLPDEKEPISITP
PPSLQYSLPGALPISGQPLTKCIHLTPQQAQEVGITLTPQQAQAQGITLTLQQAQELGIPLTPQQAQALE
ILFTPQQAQALGIPLTPQQTQVQGITLTPQQDQAPGISLTTQQAQKLGIPLTPQQAQALGIPLTPQQAQE
LGIPLTPQQAQALRVSLTPQQAQELGIPLTPQQAQALGITLTLQQAQQLGIPLTPQQAQALGITLTPKQV
QELGIPLTPQQAQALGITLTPKQAQELGIPLNPQQAQTLGIPLTPKQAQALGIPFTPQQAQALGIPLTPQ
QAQTQEITLTPQQAQALGMPLTTQQAQELGIPLTPQHAQALGMPLTTQQAQELGIPLTPQQAQALGMPLT
TQQAQELGIPLTPQQAQELGIPFTPQQAQAQEITLTPQQAQALGMPLTAQQAQELGITLTPQQAQELGIP
LTPQQAQALGIPLIPPQAQELGIPLTPQQAQALGILLIPPQAQELGIPLTPQQAQALGIPLIPPQAQELG
IPLTPQQVQALGIPLIPPQAQELEIPLTPQQAQALGIPLTPQQAQELGIPLTPQQAQELGIPLTPQQAQA
QGIPLTPQQAQALGISLTPQQAQAQGITLTPQQAQALGVPITPVNAWVSAVTLTSEQTHALESPMNLEQA
QEQLLKLGVPLTLDKAHTLGSPLTLKQVQWSHRPFQKSKASLPTGQSIISRLSPSLRLSLASSAPTAEKS
SIFGVSSTPLQISRVPLNQGPFAPGKPLEMGILSEPGKLGAPQTLRSSGQTLVYGGQSTSAQFPAPQAPP
SPGQLPISRAPPTPGQPFIAGVPPTSGQIPSLWAPLSPGQPLVPEASSIPGDLLESGPLTFSEQLQEFQP
PATAEQSPYLQAPSTPGQHLATWTLPGRASSLWIPPTSRHPPTLWPSPAPGKPQKSWSPSVAKKRLAIIS
SLKSKSVLIHPSAPDFKVAQVPFTTKKFQMSEVSDTSEETQILRDTFAIESFRTFQSHFTKYRTPVYQTP
YTDERALLTLMKPTTSPSSLTTLLRTSQISPLEWYQKSRFPPIDKPWILSSVSDTKKPKVMVPPSSPQEL
EEKRYFVDVEAQKKNLILLNQAIKTCGLPSQLHTMARTLIIEILHMDTVQLGYLFRKYIAYRLIQHARNN
IMKRLKAIQNTGKGYEARNLHMMLSRLDDYGKKVMQVWTEKQKSLGQKRNQCLKKMIHVFNQLKKIHELN
LSQPIPLIIEEKQIPASTTFVQKPFLKLLMEEDRTSDICKKFRQQEDQTEAIWNVDLSTSSYPIAEKTSM
HSLWAQLGGYPDIPRLLQLEVQSTFRKSLASLQSRVKKIPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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