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Report for CCDS12708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12708.1 Public Homo sapiens 19 ELSPBP1 24 110 108 CCDS HistoryNCBI Gene:64100Re-query CCDS DB by CCDS ID:12708.1Re-query CCDS DB by GeneID:64100See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339841.7 ENSP00000340660.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339841.7Link to Ensembl Protein Viewer:ENSP00000340660.2Re-query CCDS DB by Nucleotide ID:ENST00000339841Re-query CCDS DB by Protein ID:ENSP00000340660
Original member Current member NCBI NM_022142.5 NP_071425.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022142.5Link to Protein Sequence:NP_071425.3Re-query CCDS DB by Nucleotide ID:NM_022142Re-query CCDS DB by Protein ID:NP_071425Link to BLAST:NP_071425.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071425.3 223 Q96BH3 223 100% 0 0

Chromosomal Locations for CCDS 12708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48008668 48008737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48014171 48014308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48015893 48016039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48019719 48019877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48022170 48022327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGACCCGATGGTCCAGTTACCTGTTGGGATGGACAACCTTCCTTCTCTATTCCTATGAGTCAAGTGGAG
GGATGCATGAGGAATGTGTCTTTCCTTTCACCTACAAGGGATCTGTTTACTTCACTTGCACCCATATTCA
TAGCTTATCCCCTTGGTGTGCCACCAGAGCCGTGTACAACGGCCAGTGGAAGTACTGCCAGAGTGAAGAT
TACCCACGCTGTATCTTCCCTTTCATCTATCGAGGAAAGGCTTATAACAGCTGCATCTCCCAGGGCAGCT
TCTTAGGCAGTCTGTGGTGCTCAGTCACCTCTGTCTTCGATGAGAAACAGCAGTGGAAATTCTGTGAAAC
GAATGAGTATGGGGGAAATTCTCTCAGGAAGCCCTGCATCTTCCCCTCCATCTACAGAAATAATGTGGTC
TCTGATTGCATGGAGGATGAAAGCAACAAGCTCTGGTGCCCAACCACAGAGAACATGGATAAGGATGGAA
AGTGGAGTTTCTGTGCCGACACCAGAATTTCCGCGTTGGTCCCTGGCTTTCCTTGTCACTTTCCGTTCAA
CTATAAAAACAAGAATTATTTTAACTGCACTAACGAAGGATCAAAGGAGAACCTTGTGTGGTGTGCAACT
TCTTACAACTACGACCAAGACCACACCTGGGTGTATTGCTGA

Translation (223 aa):
MTRWSSYLLGWTTFLLYSYESSGGMHEECVFPFTYKGSVYFTCTHIHSLSPWCATRAVYNGQWKYCQSED
YPRCIFPFIYRGKAYNSCISQGSFLGSLWCSVTSVFDEKQQWKFCETNEYGGNSLRKPCIFPSIYRNNVV
SDCMEDESNKLWCPTTENMDKDGKWSFCADTRISALVPGFPCHFPFNYKNKNYFNCTNEGSKENLVWCAT
SYNYDQDHTWVYC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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