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Report for CCDS135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
135.1 Public Homo sapiens 1 DRAXIN 24 110 108 CCDS HistoryNCBI Gene:374946Re-query CCDS DB by CCDS ID:135.1Re-query CCDS DB by GeneID:374946See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 135.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294485.6 ENSP00000294485.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294485.6Link to Ensembl Protein Viewer:ENSP00000294485.5Re-query CCDS DB by Nucleotide ID:ENST00000294485Re-query CCDS DB by Protein ID:ENSP00000294485
Original member Current member NCBI NM_198545.4 NP_940947.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198545.4Link to Protein Sequence:NP_940947.3Re-query CCDS DB by Nucleotide ID:NM_198545Re-query CCDS DB by Protein ID:NP_940947Link to BLAST:NP_940947.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940947.3 349 Q8NBI3 349 100% 0 0

Chromosomal Locations for CCDS 135.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 11706259 11706709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11709275 11709465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11711851 11711965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11712340 11712429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11715119 11715208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11719584 11719696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCTGGGCCTGCCATCCACACCGCTCCCATGCTGTTCCTCGTCCTCCTGCTGCCCCTGGAGCTGAGCC
TG
GCAGGCGCCCTTGCACCTGGGACCCCTGCCCGGAACCTCCCTGAGAATCACATTGACCTCCCAGGCCC
A
GCGCTGTGGACGCCTCAGGCCAGCCACCACCGCCGGCGGGGCCCGGGCAAGAAGGAGTGGGGCCCAGGC
CTG
CCCAGCCAGGCCCAGGATGGGGCTGTGGTCACCGCCACCAGGCAGGCCTCCAGGCTGCCAGAGGCTG
AG
GGGCTGCTGCCTGAGCAGAGTCCTGCAGGCCTGCTGCAGGACAAGGACCTGCTCCTGGGACTGGCATT
G
CCCTACCCCGAGAAGGAGAACCGACCTCCAGGTTGGGAGAGGACCAGGAAACGCAGCAGGGAGCACAAG
AGA
CGCAGGGACAGGTTGAGGCTGCACCAAGGCCGAGCCTTGGTCCGAGGTCCCAGCTCCCTGATGAAGA
AG
GCAGAGCTCTCCGAAGCCCAGGTGCTGGATGCAGCCATGGAGGAATCCTCCACCAGCCTGGCGCCCAC
C
ATGTTCTTTCTCACCACCTTTGAGGCAGCACCTGCCACAGAAGAGTCCCTGATCCTGCCCGTCACCTCC
CTG
CGGCCCCAGCAGGCACAGCCCAGGTCTGACGGGGAGGTGATGCCCACGCTGGACATGGCCTTGTTCG
AC
TGGACCGATTATGAAGACTTAAAACCTGATGGTTGGCCCTCTGCAAAGAAGAAAGAGAAACACCGCGG
T
AAACTCTCCAGTGATGGTAACGAAACATCACCAGCCGAAGGGGAACCATGCGACCATCACCAAGACTGC
CTG
CCAGGGACTTGCTGCGACCTGCGGGAGCATCTCTGCACACCCCACAACCGAGGCCTCAACAACAAAT
GC
TTCGATGACTGCATGTGTGTGGAAGGGCTGCGCTGCTATGCCAAATTCCACCGGAACCGCAGGGTTAC
A
CGGAGGAAAGGGCGCTGTGTGGAGCCCGAGACGGCCAACGGCGACCAGGGATCCTTCATCAACGTCTAG


Translation (349 aa):
MAGPAIHTAPMLFLVLLLPLELSLAGALAPGTPARNLPENHIDLPGPALWTPQASHHRRRGPGKKEWGPG
L
PSQAQDGAVVTATRQASRLPEAEGLLPEQSPAGLLQDKDLLLGLALPYPEKENRPPGWERTRKRSREHK
R
RRDRLRLHQ
GRALVRGPSSLMKKAELSEAQVLDAAMEESSTSLAPTMFFLTTFEAAPATEESLILPVTS
L
RPQ
QAQPRSDGEVMPTLDMALFDWTDYEDLKPDGWPSAKKKEKHRGKLSSDGNETSPAEGEPCDHHQDC
L
P
GTCCDLREHLCTPHNRGLNNKCFDDCMCVEGLRCYAKFHRNRRVTRRKGRCVEPETANGDQGSFINV



Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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