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Report for CCDS2735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2735.1 Public Homo sapiens 3 CXCR6 24 110 108 CCDS HistoryNCBI Gene:10663Re-query CCDS DB by CCDS ID:2735.1Re-query CCDS DB by GeneID:10663See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2735.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304552.5 ENSP00000304414.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304552.5Link to Ensembl Protein Viewer:ENSP00000304414.4Re-query CCDS DB by Nucleotide ID:ENST00000304552Re-query CCDS DB by Protein ID:ENSP00000304414
Original member Current member EBI ENST00000458629.1 ENSP00000395704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458629.1Link to Ensembl Protein Viewer:ENSP00000395704.1Re-query CCDS DB by Nucleotide ID:ENST00000458629Re-query CCDS DB by Protein ID:ENSP00000395704
Original member Current member EBI ENST00000438735.1 ENSP00000396218.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438735.1Link to Ensembl Protein Viewer:ENSP00000396218.1Re-query CCDS DB by Nucleotide ID:ENST00000438735Re-query CCDS DB by Protein ID:ENSP00000396218
Original member Current member EBI ENST00000457814.1 ENSP00000396886.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457814.1Link to Ensembl Protein Viewer:ENSP00000396886.1Re-query CCDS DB by Nucleotide ID:ENST00000457814Re-query CCDS DB by Protein ID:ENSP00000396886
Original member Current member NCBI NM_001386435.1 NP_001373364.1 Accepted alive Link to Nucleotide Sequence:NM_001386435.1Link to Protein Sequence:NP_001373364.1Re-query CCDS DB by Nucleotide ID:NM_001386435Re-query CCDS DB by Protein ID:NP_001373364Link to BLAST:NP_001373364.1
Original member Current member NCBI NM_001386436.1 NP_001373365.1 Accepted alive Link to Nucleotide Sequence:NM_001386436.1Link to Protein Sequence:NP_001373365.1Re-query CCDS DB by Nucleotide ID:NM_001386436Re-query CCDS DB by Protein ID:NP_001373365Link to BLAST:NP_001373365.1
Original member Current member NCBI NM_001386437.1 NP_001373366.1 Accepted alive Link to Nucleotide Sequence:NM_001386437.1Link to Protein Sequence:NP_001373366.1Re-query CCDS DB by Nucleotide ID:NM_001386437Re-query CCDS DB by Protein ID:NP_001373366Link to BLAST:NP_001373366.1
Original member Current member NCBI NM_006564.2 NP_006555.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006564.2Link to Protein Sequence:NP_006555.1Re-query CCDS DB by Nucleotide ID:NM_006564Re-query CCDS DB by Protein ID:NP_006555Link to BLAST:NP_006555.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373364.1 342 O00574 342 100% 0 0
NP_001373365.1 342 O00574 342 100% 0 0
NP_001373366.1 342 O00574 342 100% 0 0
NP_006555.1 342 O00574 342 100% 0 0

Chromosomal Locations for CCDS 2735.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45946482 45947510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGCAGAGCATGATTACCATGAAGACTATGGGTTCAGCAGTTTCAATGACAGCAGCCAGGAGGAGCATC
AAGACTTCCTGCAGTTCAGCAAGGTCTTTCTGCCCTGCATGTACCTGGTGGTGTTTGTCTGTGGTCTGGT
GGGGAACTCTCTGGTGCTGGTCATATCCATCTTCTACCATAAGTTGCAGAGCCTGACGGATGTGTTCCTG
GTGAACCTACCCCTGGCTGACCTGGTGTTTGTCTGCACTCTGCCCTTCTGGGCCTATGCAGGCATCCATG
AATGGGTGTTTGGCCAGGTCATGTGCAAGAGCCTACTGGGCATCTACACTATTAACTTCTACACGTCCAT
GCTCATCCTCACCTGCATCACTGTGGATCGTTTCATTGTAGTGGTTAAGGCCACCAAGGCCTACAACCAG
CAAGCCAAGAGGATGACCTGGGGCAAGGTCACCAGCTTGCTCATCTGGGTGATATCCCTGCTGGTTTCCT
TGCCCCAAATTATCTATGGCAATGTCTTTAATCTCGACAAGCTCATATGTGGTTACCATGACGAGGCAAT
TTCCACTGTGGTTCTTGCCACCCAGATGACACTGGGGTTCTTCTTGCCACTGCTCACCATGATTGTCTGC
TATTCAGTCATAATCAAAACACTGCTTCATGCTGGAGGCTTCCAGAAGCACAGATCTCTAAAGATCATCT
TCCTGGTGATGGCTGTGTTCCTGCTGACCCAGATGCCCTTCAACCTCATGAAGTTCATCCGCAGCACACA
CTGGGAATACTATGCCATGACCAGCTTTCACTACACCATCATGGTGACAGAGGCCATCGCATACCTGAGG
GCCTGCCTTAACCCTGTGCTCTATGCCTTTGTCAGCCTGAAGTTTCGAAAGAACTTCTGGAAACTTGTGA
AGGACATTGGTTGCCTCCCTTACCTTGGGGTCTCACATCAATGGAAATCTTCTGAGGACAATTCCAAGAC
TTTTTCTGCCTCCCACAATGTGGAGGCCACCAGCATGTTCCAGTTATAG

Translation (342 aa):
MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYHKLQSLTDVFL
VNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLILTCITVDRFIVVVKATKAYNQ
QAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLICGYHDEAISTVVLATQMTLGFFLPLLTMIVC
YSVIIKTLLHAGGFQKHRSLKIIFLVMAVFLLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLR
ACLNPVLYAFVSLKFRKNFWKLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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