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Report for CCDS11820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11820.1 Public Homo sapiens 18 CETN1 24 110 108 CCDS HistoryNCBI Gene:1068Re-query CCDS DB by CCDS ID:11820.1Re-query CCDS DB by GeneID:1068See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327228.5 ENSP00000319052.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327228.5Link to Ensembl Protein Viewer:ENSP00000319052.3Re-query CCDS DB by Nucleotide ID:ENST00000327228Re-query CCDS DB by Protein ID:ENSP00000319052
Original member Current member NCBI NM_004066.3 NP_004057.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004066.3Link to Protein Sequence:NP_004057.1Re-query CCDS DB by Nucleotide ID:NM_004066Re-query CCDS DB by Protein ID:NP_004057Link to BLAST:NP_004057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004057.1 172 Q12798 172 100% 0 0

Chromosomal Locations for CCDS 11820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 580409 580927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCTTCCGGCTTCAAGAAGCCCAGCGCTGCCTCCACCGGCCAAAAGAGAAAGGTGGCACCTAAGCCCG
AG
CTCACTGAGGATCAGAAGCAAGAAGTTCGGGAAGCATTTGACCTCTTCGACGTGGACGGAAGTGGGAC
C
ATCGACGCGAAGGAGCTGAAGGTGGCCATGAGAGCGCTGGGCTTCGAACCCAGGAAGGAAGAGATGAAG
AAA
ATGATCTCCGAGGTGGACAGGGAAGGCACGGGGAAGATCAGCTTCAATGACTTCCTGGCCGTGATGA
CG
CAGAAGATGTCCGAGAAGGACACCAAAGAAGAAATCCTGAAGGCCTTCAGGCTCTTTGATGACGATGA
G
ACCGGGAAGATCTCGTTCAAAAACCTGAAGCGTGTGGCCAACGAGCTGGGGGAGAACCTCACGGATGAG
GAG
CTGCAGGAGATGATCGACGAAGCTGATCGGGATGGGGACGGCGAAGTGAACGAGGAGGAGTTCCTTC
GG
ATCATGAAGAAGACCAGCCTTTACTGA


Translation (172 aa):
MASGFKKPSAASTGQKRKVAPKPELTEDQKQEVREAFDLFDVDGSGTIDAKELKVAMRALGFEPRKEEMK
K
MISEVDREGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDE
E
LQEMIDEADRDGDGEVNEEEFLRIMKKTSLY




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser