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Report for CCDS45703.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45703.2 Public Homo sapiens 17 MEIOC 24 110 108 CCDS HistoryNCBI Gene:284071Re-query CCDS DB by CCDS ID:45703.2Re-query CCDS DB by GeneID:284071See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 45703.1
The coding region has been updated to represent an alternative 3' splicing pattern that is more supported by the available transcript data. There are no full-length transcripts representing this update, but it is supported by partial transcript data and by data in homologs, including mouse NM_001127576.1.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45703.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409122.7 ENSP00000386452.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409122.7Link to Ensembl Protein Viewer:ENSP00000386452.1Re-query CCDS DB by Nucleotide ID:ENST00000409122Re-query CCDS DB by Protein ID:ENSP00000386452
Original member Current member NCBI NM_001145080.3 NP_001138552.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145080.3Link to Protein Sequence:NP_001138552.2Re-query CCDS DB by Nucleotide ID:NM_001145080Re-query CCDS DB by Protein ID:NP_001138552Link to BLAST:NP_001138552.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138552.2 952 A2RUB1-4 952 100% 0 0

Chromosomal Locations for CCDS 45703.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44656614 44656682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44657127 44657261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44662317 44662471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44665384 44665488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44666376 44668233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44669383 44669517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44673366 44673546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44673976 44674196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2859 nt):
ATGGAGGTGAGACGCGGAGACACCTGCCCGCGCCCTCACCCCTCAGGCCTGAGGGAGGAAGGACTTGAGC
CCAAAGTCGCGTTCCCCGGAGGTGCGAATCGCTGTTGGAACCTCGGCGCCGACGCCGGCAGCAGGTTAAC
CGACGTCTTCGGCAGCGTGATGTTGACTGGCTCCGCTTCCTTCTACGATTGCTACACATCGCAGAGTGAA
GACAATGTAGACCTAAGGCAGACCTATACTCCATTTTCTTCAACAGAATATTCAAGTTCTGTAGATTCTT
CACTTTTCTGTGCACCATGGTCTACTTATGGAGATGACATTAAACAACCTTCTAATTCTCAGATCAGTAT
AAAGAACAGGATTCAAACAGAAAGAAATGACTATGGCAGTGAAACAGACTTATATGGACTTGTGTCTAAC
ATTTTGGAAGAACAAGATAAGTCACAGCCATATTTTGCTGAAGGGACCTGCTCCTCCAATTTAAAGTCAG
TTTGGCCAATGAACACAAGCAGATTTGCAGATCACCATGACCTCTTAACAGAAACCAAAAGGCCAATAGA
TACAGTCATCTCTCAGCAAGCTTTTTATAGTGATGAATCTGTGTCAGCAATGGAAAAGCAATACCTGCGT
AACAGTAATCTCACACCACAACAAAAAATAGATGAACTTCATCATGGATTTACTGGTTTAGATCTTGAAG
AACAATGGATGTACCCCTCACGAAGTGATCATTCTAACTGTCACAATATTCAGACAAATGATACAGCTAA
GACAACATTCCAAGAATATCCACTTATCAAAAACTGTTTTACACCCCAAACTGGTCTGTCTGATATCATG
AAAGAATCAGGAGTTGATATCTACCATTATGGAAGAGACAGAATATGTACTAAAGGTCTTGAAGCACCAC
TACAGCAAAAAAGGGCAGAGATGTTTCTTTCTCAATTTAATAGATACAATGAAAATGTAGATTATTGTAG
ATACCCAGAGTATGTTCATCCTAATAAGGCTAAGCTTAATAAATGTTCAAATTTTAGTGTCCAAGATAGC
AAAAAATTAGCCAATGGCACACCTGAAACACCAACTGTAGAAGCAGACACCTACACAAAGTTATTTCAGG
TTAAGCCAGCGAATCAGAAAAAAATGGAGGAGACAATCCCTGATCAGCAGAATTTCACATTTCCAAAAAC
TACGCCACATCTGACAGAGAAACAGTTTGCAAAGGAAGCAGTATTCACTGCTGATTTTGGCTTAACATCA
GAATATGGACTAAAACCTCACACAGCTTGTCCCGCTAATGATTTTGCTAACGTCACAGAAAAGCAACAGT
TTGCTAAACCTGATCCCCCACATTCTGAGTATTTTAAATCAGTGAATTTATTATCAAACTCAGCAACATC
TTCAGGAGGTATCAATTTAAACAGACCAACTTGGATGAATGTTCAAACAAAAAATAACACTCCTATTCCT
TATCGAAATCAAGGTAACTTGATGAAATTAAATAGTCATTTAAGTGCAGCTTCAAAAGGTTCTAACCATT
CTTCAGATTTCCCCCAACTATCATCCACAAACTTAACCCCAAATAGCAATTTATTTCAGAAATATTGCCA
AGAAAACCCTTCAGCATTTTCTAGTTTTGATTTTAGTTACAGTGGTGCAGAAAGAATCCAATCTGTCAAT
CACATAGAAGGACTAACAAAGCCTGGAGAAGAAAATCTCTTCAAATTGGTTACGGATAAAAAAATAAAGC
AGCCAAATGGATTTTGTGATAACTATTCAGCTCAGAAGTATGGGATAATTGAAAATGTAAACAAACATAA
TTTTCAAGCCAAGCCCCAGAGTGGACATTATGATCCTGAGGAAGGTCCAAAGCATTTAGATGGCTTATCA
CAAAATACATACCAAGATCTACTGGAGTCACAGGGTCATTCTAATAGCCACAGAACGAGAGGTGGAGACA
ATAGCCGTGTGAATCGCACACAAGTGTCATGCTTTTCTAATAATTATATGATGGGAGATTTAAGGCATAA
TCAGTGTTTTCAACAACTTGGTTCAAATGGGTTTCCCCTAAGATCCACCCACCCATTTGGCCATTCAGTT
GTTCCACTGTTGGATTCCTATGACTTACTTTCTTATGATGACTTAAGCCATTTGTACCCTTATTTTAATA
TGATGTATGGTGATAATTCTTTTTCTGGTCTCATGCCAACTTTTGGATTTCAAAGACCAATTAAAACCCG
TAGTGGACCAGCCAGTGAACTTCATATTCGTCTAGAAGAGTGCTGTGAACAATGGAGAGCATTAGAAAAA
GAGAGAAAAAAGACTGAATTAGCCCTTGCCAAGAATTATCCTGGAAAAAAAGTATCCAGTACTAACAACA
CTCCAGTTCCAAGGCTGACTTCCAACCCATCTAGAGTTGATCGCTTAATTGTGGATGAACTTCGAGAACT
AGCCAGAGTTGTGACTTTACTAGGCAAAATGGAACGTCTTCGGAGTTCTCTTCTTCATGCCAGTATCTCT
ACTGCTCTTGATAGACACTTGGAGTCTATTCACATTGTACAGTCACGTAGAAAGGATGAAATTGTTAATG
CTTCCAATCGGCAAAGGCAAGGAGTTCCTAGATGCCAAGATGACAGAGATGTTTTTGCCCTTGCTTCTGC
AATTAAAGAGATGTGTGTGGCTACTCGGAAAACACGCACTGCCCTGTGGTGTGCACTGCAGATGACCTTG
CCAAAAACAGCCAGTACAGCTGATGTGGTAAAGCCTTTACAAGATACAGTAAACTGTGAAGATAAAGTCC
ATGAAAGCATAAATAGTAGCAATCCAATGAACCAGAGAGGTGAAACAAACAAACATTAA

Translation (952 aa):
MEVRRGDTCPRPHPSGLREEGLEPKVAFPGGANRCWNLGADAGSRLTDVFGSVMLTGSASFYDCYTSQSE
DNVDLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPSNSQISIKNRIQTERNDYGSETDLYGLVSN
ILEEQDKSQPYFAEGTCSSNLKSVWPMNTSRFADHHDLLTETKRPIDTVISQQAFYSDESVSAMEKQYLR
NSNLTPQQKIDELHHGFTGLDLEEQWMYPSRSDHSNCHNIQTNDTAKTTFQEYPLIKNCFTPQTGLSDIM
KESGVDIYHYGRDRICTKGLEAPLQQKRAEMFLSQFNRYNENVDYCRYPEYVHPNKAKLNKCSNFSVQDS
KKLANGTPETPTVEADTYTKLFQVKPANQKKMEETIPDQQNFTFPKTTPHLTEKQFAKEAVFTADFGLTS
EYGLKPHTACPANDFANVTEKQQFAKPDPPHSEYFKSVNLLSNSATSSGGINLNRPTWMNVQTKNNTPIP
YRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTPNSNLFQKYCQENPSAFSSFDFSYSGAERIQSVN
HIEGLTKPGEENLFKLVTDKKIKQPNGFCDNYSAQKYGIIENVNKHNFQAKPQSGHYDPEEGPKHLDGLS
QNTYQDLLESQGHSNSHRTRGGDNSRVNRTQVSCFSNNYMMGDLRHNQCFQQLGSNGFPLRSTHPFGHSV
VPLLDSYDLLSYDDLSHLYPYFNMMYGDNSFSGLMPTFGFQRPIKTRSGPASELHIRLEECCEQWRALEK
ERKKTELALAKNYPGKKVSSTNNTPVPRLTSNPSRVDRLIVDELRELARVVTLLGKMERLRSSLLHASIS
TALDRHLESIHIVQSRRKDEIVNASNRQRQGVPRCQDDRDVFALASAIKEMCVATRKTRTALWCALQMTL
PKTASTADVVKPLQDTVNCEDKVHESINSSNPMNQRGETNKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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