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Report for CCDS56027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56027.1 Public Homo sapiens 17 ARHGAP23 24 110 108 CCDS HistoryNCBI Gene:57636Re-query CCDS DB by CCDS ID:56027.1Re-query CCDS DB by GeneID:57636See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56027.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622683.5 ENSP00000481862.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000622683.5Link to Ensembl Protein Viewer:ENSP00000481862.1Re-query CCDS DB by Nucleotide ID:ENST00000622683Re-query CCDS DB by Protein ID:ENSP00000481862
Original member Current member NCBI NM_001199417.2 NP_001186346.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199417.2Link to Protein Sequence:NP_001186346.1Re-query CCDS DB by Nucleotide ID:NM_001199417Re-query CCDS DB by Protein ID:NP_001186346Link to BLAST:NP_001186346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186346.1 1491 Q9P227-1 1491 100% 0 0

Chromosomal Locations for CCDS 56027.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38428486 38428548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38458102 38458263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38460905 38460932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38462846 38462941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38463118 38463196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38463328 38463382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38466167 38467331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38469144 38469299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38469524 38469635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38469847 38469904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38471863 38472006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38477579 38477896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38479436 38479497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38479753 38479883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38482022 38482143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38482523 38482678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38486062 38486140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38490102 38490175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38490462 38490551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38491407 38491532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38497785 38497826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38498414 38498510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38500597 38500628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38509944 38510972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4476 nt):
ATGAATGGAGTCGCCTTCTGCCTGGTCGGGATCCCGCCCCGCCCGGAGCCCCGGCCCCCACAGCTGCCAC
TG
GGCCCAAGAGATGGGTGCTCTCCTAGGCGCCCCTTCCCCTGGCAGGGGCCGAGGACGCTGCTGCTGTA
C
AAAAGTCCCCAGGACGGCTTTGGCTTCACTCTGCGCCACTTCATCGTGTACCCACCCGAGTCGGCCGTG
CAC
TGCAGCCTGAAGGAGGAAGAGAATGGAGGCCGTGGAGGAGGACCCTCCCCCCGGTACCGCCTGGAGC
CC
ATGGACACCATCTTTGTCAAGAATGTGAAGGAAGACGGCCCTGCCCATAGGGCGGGGCTTCGCACAGG
A
GACCGGCTGGTAAAGGTGAATGGGGAAAGCGTCATTGGGAAGACCTACTCTCAGGTCATAGCTCTGATC
CAG
AATAGTGATGACACTCTGGAGCTGTCTATCATGCCCAAGGACGAGGACATCCTCCAGCTGGCCTACT
CC
CAGGATGCCTACCTGAAAGGGAACGAGCCGTATTCTGGAGAGGCCCGCAGCATCCCAGAGCCACCCCC
G
ATCTGCTACCCCCGCAAGACCTACGCCCCTCCTGCCCGGGCCTCCACCAGGGCCACTATGGTGCCTGAG
CCC
ACCTCAGCACTGCCCAGTGACCCCCGGAGTCCTGCTGCCTGGAGTGACCCGGGGCTCCGTGTGCCAC
CT
GCTGCCCGTGCCCACCTGGACAACTCTTCCTTGGGGATGAGCCAGCCCCGCCCCAGCCCTGGTGCCTT
C
CCCCACCTCTCCTCGGAGCCCCGGACGCCCCGTGCCTTCCCAGAGCCTGGCAGCCGGGTGCCCCCCAGC
AGA
CTGGAGTGCCAGCAGGCCTTGTCACACTGGCTGTCAAACCAGGTACCCCGCCGGGCGGGGGAGAGAC
GG
TGCCCAGCCATGGCCCCCCGGGCCCGCAGCGCCTCCCAGGACCGGTTGGAGGAGGTGGCTGCCCCCCG
C
CCGTGGCCCTGCTCCACCTCCCAGGATGCTTTGAGCCAGCTGGGCCAGGAGGGCTGGCACCGAGCTCGC
TCA
GATGACTACTTGAGCCGGGCCACCCGTTCTGCCGAGGCACTGGGGCCAGGGGCACTGGTGTCACCCC
GC
TTTGAGCGGTGTGGCTGGGCTTCCCAGCGTTCGTCTGCCCGCACCCCCGCCTGCCCAACTCGGGACCT
G
CCAGGGCCCCAGGCCCCACCCCCGTCTGGCCTGCAGGGCCTGGATGACCTCGGGTACATCGGCTACCGG
AGC
TACAGCCCATCATTCCAGCGCCGGACCGGCCTCCTCCATGCGCTCTCCTTCCGGGACTCACCCTTTG
GG
GGGCTGCCTACCTTCAACCTGGCCCAGTCCCCTGCGTCATTCCCACCAGAGGCCTCCGAGCCACCCAG
G
GTTGTACGGCCGGAACCCAGCACCCGGGCCCTGGAGCCTCCTGCGGAGGATCGCGGCGATGAGGTGGTC
CTG
AGGCAGAAGCCCCCGACGGGCCGCAAGGTTCAGCTGACCCCCGCAAGACAGATGAACCTTGGATTTG
GT
GACGAGTCCCCAGAGCCAGAGGCCAGTGGGCGAGGGGAACGCCTGGGCAGGAAGGTGGCCCCTTTGGC
C
ACCACCGAAGACTCTCTGGCTTCCATCCCCTTTATTGATGAGCCCACCAGCCCCAGCATTGACCTCCAA
GCC
AAGCACGTCCCTGCCTCTGCTGTGGTCTCCAGTGCCATGAACTCAGCCCCTGTCCTGGGCACCAGCC
CA
TCTTCCCCGACCTTCACTTTCACCCTCGGACGCCATTACTCGCAGGACTGCAGCAGCATCAAGGCTGG
C
CGCCGCTCCTCCTACCTGCTGGCCATCACCACGGAGCGCTCCAAGTCCTGCGATGATGGACTCAACACC
TTC
CGCGACGAGGGCCGGGTTCTGCGGCGCCTGCCAAACCGCATACCCAGCCTGCGGATGCTCCGGAGCT
TC
TTCACCGACGGGTCCTTGGATAGCTGGGGCACCTCTGAAGATGCTGACGCTCCTTCTAAGCGACACTC
A
ACCTCTGACCTCTCAGATGCGACCTTCAGCGATATCAGGAGAGAAGGCTGGTTGTATTATAAGCAGATT
CTC
ACCAAGAAGGGGAAGAAAGCGGGCAGCGGCCTGCGCCAGTGGAAGCGGGTGTACGCCGCGCTGCGGG
CG
CGCTCGCTCTCGCTGAGCAAGGAGCGGCGGGAGCCCGGGCCGGCGGCGGCGGGGGCTGCGGCGGCCGG
C
GCAGGTGAGGACGAGGCGGCGCCCGTCTGCATCGGCTCCTGCCTCGTGGACATCTCCTACAGCGAGACC
AAG
AGGAGGCACGTGTTCCGGCTGACCACCGCTGACTTCTGTGAATATCTCTTTCAGGCTGAGGACCGGG
AT
GACATGCTGGGCTGGATCAGAGCGATCCGGGAGAACAGCAGGGCCGAGGGCGAGGACCCCGGCTGTGC
C
AACCAAGCTCTGATCAGCAAGAAGCTTAACGATTATCGCAAAGTGAGCCATAGCTCTGGGCCCAAAGCT
GAT
TCCTCCCCCAAAGGCTCTCGCGGCCTGGGGGGCCTCAAGTCTGAGTTCCTCAAGCAGAGTGCGGCAC
GT
GGCCTCAGGACTCAGGACCTGCCCGCAGGGAGCAAGGATGACAGTGCTGCAGCCCCCAAAACCCCCTG
G
GGCATCAACATCATCAAGAAAAATAAGAAGGCCGCTCCGAGGGCGTTTGGGGTCAGGCTGGAGGAGTGC
CAG
CCAGCCACGGAGAACCAGCGCGTCCCCTTAATCGTGGCTGCATGCTGTCGCATTGTGGAGGCACGAG
GG
CTGGAGTCCACAGGCATTTACCGAGTGCCCGGCAACAATGCAGTGGTGTCCAGCCTACAGGAGCAGCT
C
AACCGCGGGCCTGGTGACATCAACCTGCAGGATGAGCGCTGGCAAGACCTCAATGTGATCAGCAGCCTG
CTC
AAGTCCTTCTTCCGAAAGCTGCCCGAGCCTCTTTTCACTGATGACAAATACAACGACTTCATCGAGG
CC
AACCGCATTGAGGACGCGCGGGAGCGAATGAGGACGCTGCGGAAGCTGATCCGGGATCTCCCAGGACA
C
TACTATGAAACGCTCAAATTCCTTGTGGGCCATCTCAAGACCATCGCTGACCACTCTGAGAAAAACAAG
ATG
GAACCCCGGAACCTGGCCCTGGTCTTTGGGCCGACACTGGTGAGGACGTCTGAGGACAACATGACAG
AC
ATGGTGACCCACATGCCTGACCGCTACAAGATCGTGGAGACACTGATCCAGCACTCAGACTGGTTCTT
C
AGTGACGAAGAGGACAAGGGAGAGAGAACCCCTGTGGGCGACAAGGAGCCTCAGGCAGTGCCCAACATT
GAG
TACCTCCTGCCCAACATTGGCAGGACAGTGCCCCCTGGCGACCCGGGGTCAGATTCTACCACCTGTA
GT
TCAGCCAAGTCCAAGGGTTCGTGGGCCCCCAAGAAGGAGCCGTACGCCCGGGAGATGCTGGCGATCTC
C
TTCATCTCGGCCGTCAACCGCAAGCGCAAGAAGCGGCGGGAGGCGCGGGGGCTGGGCAGCAGCACCGAC
GAC
GACTCGGAGCAGGAGGCGCACAAGCCTGGGGCGGGGGCCACAGCGCCGGGGACTCAGGAGCGGCCGC
AG
GGGCCGCTGCCTGGCGCCGTCGCCCCCGAGGCCCCCGGACGCCTCAGTCCCCCGGCGGCGCCGGAGGA
G
CGGCCGGCCGCGGACACGCGCTCCATTGTGTCGGGCTACTCCACCCTGTCCACCATGGACCGCAGCGTG
TGC
TCGGGCGCTAGCGGTCGGCGGGCAGGGGCGGGGGATGAGGCGGACGACGAGCGTAGCGAGCTGAGCC
AC
GTGGAGACGGACACTGAGGGCGCGGCGGGCGCGGGGCCTGGGGGGCGCCTGACACGCCGGCCGTCCTT
C
AGCTCGCACCACCTCATGCCCTGCGACACTCTGGCGCGCCGCCGCCTGGCCCGGGGCCGCCCAGACGGC
GAG
GGCGCGGGCCGGGGCGGTCCCCGCGCCCCGGAGCCGCCCGGCTCGGCGTCGTCCAGCAGCCAGGAGT
CG
CTGCGGCCCCCGGCGGCGGCGCTGGCCTCCCGGCCCTCGCGCATGGAGGCGCTGCGTCTAAGGCTCCG
C
GGCACGGCGGACGACATGCTCGCCGTGCGCCTGCGGCGGCCGCTGTCGCCCGAGACCCGGCGGCGCCGG
AGC
AGCTGGCGCCGCCACACCGTGGTGGTGCAGAGCCCGCTGACTGACCTCAACTTCAACGAGTGGAAGG
AG
CTGGGCGGAGGGGGCCCCCCGGAGCCTGCGGGCGCGCGGGCGCACAGTGACAACAAGGACTCCGGACT
C
AGCAGCCTGGAGTCCACCAAGGCGCGGGCCCCGTCGTCCGCTGCCTCGCAGCCGCCCGCGCCCGGGGAC
ACG
GGGTCCCTGCAGAGCCAGCCCCCGCGCCGCTCGGCCGCCTCCCGCCTGCATCAGTGTCTGTGA


Translation (1491 aa):
MNGVAFCLVGIPPRPEPRPPQLPLGPRDGCSPRRPFPWQGPRTLLLYKSPQDGFGFTLRHFIVYPPESAV
H
CSLK
EEENGGRGGGPSPRYRLEPMDTIFVKNVKEDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALI
Q
N
SDDTLELSIMPKDEDILQLAYSQDAYLKGNEPYSGEARSIPEPPPICYPRKTYAPPARASTRATMVPE
P
TSALPSDPRSPAAWSDPGLRVPPAARAHLDNSSLGMSQPRPSPGAFPHLSSEPRTPRAFPEPGSRVPPS
R
LECQQALSHWLSNQVPRRAGERRCPAMAPRARSASQDRLEEVAAPRPWPCSTSQDALSQLGQEGWHRAR
S
DDYLSRATRSAEALGPGALVSPRFERCGWASQRSSARTPACPTRDLPGPQAPPPSGLQGLDDLGYIGYR
S
YSPSFQRRTGLLHALSFRDSPFGGLPTFNLAQSPASFPPEASEPPRVVRPEPSTRALEPPAEDRGDEVV
L
RQKPPTGRKVQLTPARQMNLGFGDESPEPEASGRGERLGRKVAPLATTEDSLASIPFI
DEPTSPSIDLQ
A
KHVPASAVVSSAMNSAPVLGTSPSSPTFTFTLGRHYSQDC
SSIKAGRRSSYLLAITTERSKSCDDGLNT
F
RDEGRVL
RRLPNRIPSLRMLRSFFTDGSLDSWGTSEDADAPSKRHSTSDLSDATFSDIRREGWLYYKQI
L
TKKGK
KAGSGLRQWKRVYAALRARSLSLSKERREPGPAAAGAAAAGAGEDEAAPVCIGSCLVDISYSET
K
RRHVFRLTTADFCEYLFQAEDRDDMLGWIRAIRENSRAEGE
DPGCANQALISKKLNDYRKVSHSSGPKA
D
SSPKGSRGLGGLKSEFLKQSAARGLRTQDLPAGSK
DDSAAAPKTPWGINIIKKNKKAAPRAFGVRLEEC
Q
PATENQ
RVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQDLNVISSL
L
KSFFRKLPEPLFTD
DKYNDFIEANRIEDARERMRTLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNK
M
EPRNLALVFGPTLVRTSEDNMTDMVTHMPDRYKIVETLIQH
SDWFFSDEEDKGERTPVGDKEPQAVPNI
E
YLLPNIGRTVPPGDPGS
DSTTCSSAKSKGSWAPKKEPYAREMLAISFISAVNRKRKKRREARGLGSSTD
D
DSEQEAHKPGAGATAPGTQERPQGPLPGAVAPEAPGRLSPPAAPEERPAADTRSIVSGYSTLSTMDRSV
C
SGASGRRAGAGDEADDERSELSHVETDTEGAAGAGPGGRLTRRPSFSSHHLMPCDTLARRRLARGRPDG
E
GAGRGGPRAPEPPGSASSSSQESLRPPAAALASRPSRMEALRLRLRGTADDMLAVRLRRPLSPETRRRR
S
SWRRHTVVVQSPLTDLNFNEWKELGGGGPPEPAGARAHSDNKDSGLSSLESTKARAPSSAASQPPAPGD
T
GSLQSQPPRRSAASRLHQCL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser