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Report for CCDS4327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4327.1 Public Homo sapiens 5 HAND1 12 104 71 CCDS HistoryNCBI Gene:9421Re-query CCDS DB by CCDS ID:4327.1Re-query CCDS DB by GeneID:9421

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Sequence IDs included in CCDS 4327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000231121 ENSP00000231121 Accepted alive Link to Ensembl Transcript Viewer:ENST00000231121Link to Ensembl Protein Viewer:ENSP00000231121Re-query CCDS DB by Nucleotide ID:ENST00000231121Re-query CCDS DB by Protein ID:ENSP00000231121
Original member Current member EBI,WTSI OTTHUMT00000252511 OTTHUMP00000160696 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000252511Link to Vega Protein Viewer:OTTHUMP00000160696Re-query CCDS DB by Nucleotide ID:OTTHUMT00000252511Re-query CCDS DB by Protein ID:OTTHUMP00000160696
Original member Current member NCBI NM_004821.2 NP_004812.1 Accepted alive Link to Nucleotide Sequence:NM_004821.2Link to Protein Sequence:NP_004812.1Re-query CCDS DB by Nucleotide ID:NM_004821Re-query CCDS DB by Protein ID:NP_004812Link to BLink:NP_004812.1

Chromosomal Locations for CCDS 4327.1

Assembly GRCh37.p10 (GCF_000001405.22)

On '-' strand of Chromosome 5 (NC_000005.9)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 5Link to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5

Chromosome Start Stop Links
5 153855366 153855470 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 153857026 153857568 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGAACCTCGTGGGCAGCTACGCACACCATCACCACCATCACCACCCGCACCCTGCGCACCCCATGCTCC
ACGAACCCTTCCTCTTCGGTCCGGCCTCGCGCTGTCATCAGGAAAGGCCCTACTTCCAGAGCTGGCTGCT
GAGCCCGGCTGACGCTGCCCCGGACTTCCCTGCGGGCGGGCCGCCGCCCGCGGCCGCTGCAGCCGCCACC
GCCTATGGTCCTGACGCCAGGCCTGGGCAGAGCCCCGGGCGGCTGGAGGCGCTTGGCGGCCGTCTTGGCC
GGCGGAAAGGCTCAGGACCCAAGAAGGAGCGGAGACGCACTGAGAGCATTAACAGCGCATTCGCGGAGTT
GCGCGAGTGCATCCCCAACGTGCCGGCCGACACCAAGCTCTCCAAGATCAAGACTCTGCGCCTAGCCACC
AGCTACATCGCCTACCTGATGGACGTGCTGGCCAAGGATGCACAGTCTGGCGATCCCGAGGCCTTCAAGG
CTGAACTCAAGAAGGCGGATGGCGGCCGTGAGAGCAAGCGGAAAAGGGAGCTGCAGCAGCACGAAGGTTT
TCCTCCTGCCCTGGGCCCAGTCGAGAAGAGGATTAAAGGACGCACCGGCTGGCCGCAGCAAGTCTGGGCG
CTGGAGTTAAACCAGTGA

Translation (215 aa):
MNLVGSYAHHHHHHHPHPAHPMLHEPFLFGPASRCHQERPYFQSWLLSPADAAPDFPAGGPPPAAAAAAT
AYGPDARPGQSPGRLEALGGRLGRRKGSGPKKERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLAT
SYIAYLMDVLAKDAQSGDPEAFKAELKKADGGRESKRKRELQQHEGFPPALGPVEKRIKGRTGWPQQVWA
LELNQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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