NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30260.1 Public Mus musculus X Nr0b1 23 108 98 CCDS HistoryNCBI Gene:11614Re-query CCDS DB by CCDS ID:30260.1Re-query CCDS DB by GeneID:11614See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026036.4 ENSMUSP00000026036.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026036.4Link to Ensembl Protein Viewer:ENSMUSP00000026036.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026036Re-query CCDS DB by Protein ID:ENSMUSP00000026036
Original member Current member NCBI NM_007430.5 NP_031456.1 Accepted alive Link to Nucleotide Sequence:NM_007430.5Link to Protein Sequence:NP_031456.1Re-query CCDS DB by Nucleotide ID:NM_007430Re-query CCDS DB by Protein ID:NP_031456Link to BLAST:NP_031456.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031456.1 472 Q61066 472 100% 0 0

Chromosomal Locations for CCDS 30260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 86191801 86192974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 86195351 86195595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGCGGGTGAGGACCACCCGTGGCAGGGCAGCATCCTCTACAATCTACTGATGAGCGCGAAGCAGAAGC
ACGCGTCTCAGGAAGAGCGAGAGGTGCGCTTGGGGGCTCAGTGCTGGGGTTGCGCCTGCGGTGCTCAGCC
CGTCCTGGGTGGGGAGAGACTGTCCGGCGGGCAAGCCAGGTCCCTCTTGTACCGCTGCTGCTTTTGTGGG
GAGAATCACCCGCGCCAGGGTGGCATCCTCTACTCTATGCTCACCAACGCCAGGCAGCCAAGCGTGGCGA
CCCAGGCGCCGAGGGCACGATTCGGAGCACCTTGCTGGGGCTGCGCCTGCGGCAGCGCAGAGCCCCTGGT
GGGCAGAGAGGGGCTGCCGGCTGGCCAGGCCCCCTCGCTCCTGTACCGCTGCTGCTTCTGCGGAGAAGAG
CACCCGAGGCAGGGCAGCATCTTATACAGCTTGCTCACTAGCGCTCAGCAAACGCACGTGTCTCGGGAAG
CACCCGAGGCACATCGCAGAGGCGAGTGGTGGCAGCTGTCCTACTGTACCCAGAGTGTGGGTGGCCCAGA
GGGGCTGCAGAGCACACAGGCCATGGCGTTCCTGTACCGCAGCTATGTGTGCGGTGAAGAGCAGCCCCAG
CAGATCAGCGTTGCCTCTGGCACGCCCGTGAGCGCAGACCAAACACCAGCGACCCCGCAAGAGCAGCCGA
GGGCTCCCTGGTGGGACGCCTCACCTGGTGTGCAGCGTCTGATCACACTCAAGGATCCACAGGTGGTGTG
CGAGGCAGCGTCCGCTGGCCTGTTGAAGACCCTGCGCTTTGTCAAGTACTTGCCCTGCTTCCAGATCCTG
CCCCTAGATCAGCAGCTGGTGCTGGTGCGGAGCTGTTGGGCGCCCCTACTCATGCTTGAGTTGGCCCAAG
ATCACCTGCACTTCGAGATGATGGAGATCCCGGAGACCAACACGACGCAGGAAATGCTTACCACCAGGCG
GCAGGAGACCGAAGGTCCAGAGCCTGCAGAGCCCCAGGCCACAGAGCAGCCACAGATGGTGTCCGCGGAG
GCTGGGCACTTGCTCCCAGCTGCTGCGGTCCAGGCCATCAAGAGTTTCTTTTTCAAGTGCTGGAGTCTGA
ACATTGACACCAAAGAGTATGCCTATCTGAAAGGGACCGTGCTCTTTAACCCAGACCTGCCTGGCCTGCA
GTGCGTGAAATACATTGAGGGTCTTCAGTGGAGAACCCAGCAGATCCTTACTGAGCACATCCGGATGATG
CAGAGAGAGTACCAGATCAGATCCGCTGAACTGAACAGTGCCCTTTTCCTGCTGAGATTCATCAATAGCG
ATGTCGTCACTGAACTCTTTTTCAGGCCCATCATTGGTGCAGTCAGCATGGATGATATGATGCTGGAGAT
GCTCTGTGCAAAGCTGTGA

Translation (472 aa):
MAGEDHPWQGSILYNLLMSAKQKHASQEEREVRLGAQCWGCACGAQPVLGGERLSGGQARSLLYRCCFCG
ENHPRQGGILYSMLTNARQPSVATQAPRARFGAPCWGCACGSAEPLVGREGLPAGQAPSLLYRCCFCGEE
HPRQGSILYSLLTSAQQTHVSREAPEAHRRGEWWQLSYCTQSVGGPEGLQSTQAMAFLYRSYVCGEEQPQ
QISVASGTPVSADQTPATPQEQPRAPWWDASPGVQRLITLKDPQVVCEAASAGLLKTLRFVKYLPCFQIL
PLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQATEQPQMVSAE
AGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMM
QREYQIRSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLCAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH