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Report for CCDS80198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80198.1 Public Mus musculus 4 Sdf4 23 108 98 CCDS HistoryNCBI Gene:20318Re-query CCDS DB by CCDS ID:80198.1Re-query CCDS DB by GeneID:20318See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80198.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097734.10 ENSMUSP00000095340.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097734.10Link to Ensembl Protein Viewer:ENSMUSP00000095340.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097734Re-query CCDS DB by Protein ID:ENSMUSP00000095340
Original member Current member NCBI NM_001302469.1 NP_001289398.1 Accepted alive Link to Nucleotide Sequence:NM_001302469.1Link to Protein Sequence:NP_001289398.1Re-query CCDS DB by Nucleotide ID:NM_001302469Re-query CCDS DB by Protein ID:NP_001289398Link to BLAST:NP_001289398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289398.1 218 Q61112-2 218 100% 0 0

Chromosomal Locations for CCDS 80198.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155996196 155996518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155999398 155999534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156000670 156000783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156002473 156002555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGTCTGGCTGGTGGCAATGACGCCCAGGCAGAGTTCCCTCTGTGGTCTAGCTGCTCATGGCCTCTGGT
TCTTGGGCCTTGTCCTTCTGATGGATGCAACCGCTAGACCTGCCAACCACTCATCTACTCGGGAAAGAGC
GGCTAACAGGGAGGAAAATGAGATCATGCCCCCAGACCACCTGAATGGGGTGAAGCTGGAGATGGATGGA
CACCTCAACAAGGACTTCCATCAGGAGGTTTTCCTGGGAAAGGACATGGATGGGTTTGATGAAGACTCAG
AGCCACGGAGAAGCCGGAGGAAGCTGATGGTCATCTTTTCCAAGGTAGACGTGAACACTGACCGGAGGAT
CAGCGCTAAGGAGATGCAGCACTGGATTATGGAGAAAACAGCAGAGCACTTCCAGGAGGCCGTCAAGGAA
AACAAACTGCACTTCAGGGCTGTGGACCCTGACGGTGACGGCCATGTTTCCTGGGATGAATATAAAGTGA
AGTTTTTGGCAAGCAAAGGCCACAATGAAAGGGAGATTGCTGAAGCCATCAAGAACCATGAGGAGCTCAA
AGTGGATGAGGAGATTGCGCTTCATTTCCTGCTGCTTACTGGAGGGCCCTTGTCCTGTTCCTCTGGTGAG
ACCAGTATATGCCTGTCCAGGTTGTAG

Translation (218 aa):
MVWLVAMTPRQSSLCGLAAHGLWFLGLVLLMDATARPANHSSTRERAANREENEIMPPDHLNGVKLEMDG
HLNKDFHQEVFLGKDMDGFDEDSEPRRSRRKLMVIFSKVDVNTDRRISAKEMQHWIMEKTAEHFQEAVKE
NKLHFRAVDPDGDGHVSWDEYKVKFLASKGHNEREIAEAIKNHEELKVDEEIALHFLLLTGGPLSCSSGE
TSICLSRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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