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Report for CCDS79671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79671.1 Public Mus musculus 19 Rbm4 23 108 98 CCDS HistoryNCBI Gene:19653Re-query CCDS DB by CCDS ID:79671.1Re-query CCDS DB by GeneID:19653See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164209.8 ENSMUSP00000129745.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164209.8Link to Ensembl Protein Viewer:ENSMUSP00000129745.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164209Re-query CCDS DB by Protein ID:ENSMUSP00000129745
Original member Current member EBI ENSMUST00000178615.7 ENSMUSP00000136254.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178615.7Link to Ensembl Protein Viewer:ENSMUSP00000136254.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178615Re-query CCDS DB by Protein ID:ENSMUSP00000136254
Original member Current member NCBI NM_001290124.1 NP_001277053.1 Accepted alive Link to Nucleotide Sequence:NM_001290124.1Link to Protein Sequence:NP_001277053.1Re-query CCDS DB by Nucleotide ID:NM_001290124Re-query CCDS DB by Protein ID:NP_001277053Link to BLAST:NP_001277053.1
Original member Current member NCBI NM_001290125.1 NP_001277054.1 Accepted alive Link to Nucleotide Sequence:NM_001290125.1Link to Protein Sequence:NP_001277054.1Re-query CCDS DB by Nucleotide ID:NM_001290125Re-query CCDS DB by Protein ID:NP_001277054Link to BLAST:NP_001277054.1

Chromosomal Locations for CCDS 79671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4785548 4785567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4792398 4792809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGTGAAGCTGTTCATTGGAAATCTGCCCCGGGAGGCCACAGAGCAGGAGATCCGCTCACTCTTCGAGC
AGTACGGGAAGGTGCTGGAATGTGACATCATTAAGAATTATGGCTTTGTGCACATAGAGGACAAGACGGC
CGCTGAGGATGCCATACGCAACCTGCACCACTACAAGCTGCACGGAGTGAACATCAATGTGGAAGCCAGC
AAGAATAAGAGCAAAGCTTCAACCAAGTTACACGTGGGCAACATCAGCCCCACTTGTACCAACCAAGAGC
TTCGGGCCAAGTTTGAGGAGTACGGCCCAGTCATCGAATGTGACATCGTGAAAGATTATGCCTTTGTACA
CATGGAGCGGGCAGAGGATGCGGTGGAGGCCATCAGGGGCCTCGACAACACAGAGTTTCAAGGTGGGATG
TGTGTGGGCTGA

Translation (143 aa):
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS
KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGGM
CVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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