NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79119.1 Public Mus musculus 12 Psma3 23 108 98 CCDS HistoryNCBI Gene:19167Re-query CCDS DB by CCDS ID:79119.1Re-query CCDS DB by GeneID:19167See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160864.7 ENSMUSP00000124894.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160864.7Link to Ensembl Protein Viewer:ENSMUSP00000124894.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000160864Re-query CCDS DB by Protein ID:ENSMUSP00000124894
Original member Current member NCBI NM_001310595.1 NP_001297524.1 Accepted alive Link to Nucleotide Sequence:NM_001310595.1Link to Protein Sequence:NP_001297524.1Re-query CCDS DB by Nucleotide ID:NM_001310595Re-query CCDS DB by Protein ID:NP_001297524Link to BLAST:NP_001297524.1
Original member Current member NCBI NM_001310596.1 NP_001297525.1 Accepted alive Link to Nucleotide Sequence:NM_001310596.1Link to Protein Sequence:NP_001297525.1Re-query CCDS DB by Nucleotide ID:NM_001310596Re-query CCDS DB by Protein ID:NP_001297525Link to BLAST:NP_001297525.1

Chromosomal Locations for CCDS 79119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 70983440 70983442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70984493 70984594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70984672 70984745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70986863 70986935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70988424 70988489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70990485 70990531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70993013 70993080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70993506 70993570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70994351 70994395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCAGTTGCAGGTTTGCTGGCAGATGCTCGTTCATTAGCAGACATAGCGAGAGAAGAAGCATCCAACT
TTAGGTCCAACTTCGGCTATAACATTCCTCTAAAACATCTTGCAGACAGAGTGGCCATGTATGTACACGC
CTATACACTCTACAGCGCTGTTAGACCTTTTGGCTGCAGTTTCATGTTGGGGTCTTACAGTGCGAATGAT
GGTGCACAGCTCTATATGATCGACCCATCAGGTGTTTCATATGGTTACTGGGGCTGTGCGATTGGCAAAG
CCAGGCAGGCTGCAAAGACAGAGATAGAAAAGCTTCAGATGAAGGAAATGACTTGCCGTGATGTAGTTAA
AGAAGTTGCAAAAATAATTTACATAGTACACGATGAAGTTAAGGATAAAGCTTTTGAACTGGAGCTCAGC
TGGGTTGGTGAATTAACTAAAGGAAGACATGAAATTGTTCCCAAAGACATAAGAGAGGAAGCAGAGAAAT
ATGCCAAGGAATCTTTGAAGGAAGAAGATGAATCAGATGATGACAATATGTAA

Translation (180 aa):
MAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSAND
GAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELS
WVGELTKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH