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Report for CCDS70064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70064.1 Public Mus musculus 10 Ptbp1 23 108 98 CCDS HistoryNCBI Gene:19205Re-query CCDS DB by CCDS ID:70064.1Re-query CCDS DB by GeneID:19205See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095457.10 ENSMUSP00000093109.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095457.10Link to Ensembl Protein Viewer:ENSMUSP00000093109.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095457Re-query CCDS DB by Protein ID:ENSMUSP00000093109
Original member NCBI NM_001283013.1 NP_001269942.1 Updated not alive Link to Nucleotide Sequence:NM_001283013.1Link to Protein Sequence:NP_001269942.1Re-query CCDS DB by Nucleotide ID:NM_001283013Re-query CCDS DB by Protein ID:NP_001269942
Current member NCBI NM_001283013.2 NP_001269942.1 Accepted alive Link to Nucleotide Sequence:NM_001283013.2Link to Protein Sequence:NP_001269942.1Re-query CCDS DB by Nucleotide ID:NM_001283013Re-query CCDS DB by Protein ID:NP_001269942Link to BLAST:NP_001269942.1

Chromosomal Locations for CCDS 70064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79854714 79854721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79856504 79856534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79858752 79858824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859072 79859271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859352 79859522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859602 79859712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859781 79859955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79860824 79860969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862014 79862047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862449 79862541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862653 79862869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862978 79863055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79863145 79863277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTG
TCAGCAACGGCCCCTTCATCATGAGCAGCTCTGCCTCAGCAGGGCTGCCCTTTGGAAAGGTTACCAACCT
TCTCATGCTGAAGGGGAAGAACCAGGCCTTCATTGAGATGAACACAGAGGAGGCTGCCAACACTATGGTT
AACTACTATACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAAG
AGCTCAAGACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTAAACTCCGTCCA
GTCTGGAAACCTGGCCTTGGCAGCGTCCGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGGCAGAGC
CCAGTGCTCAGGATCATTGTGGAAAACCTTTTCTACCCAGTGACCCTGGACGTGCTGCACCAGATCTTCT
CTAAGTTTGGCACCGTCCTGAAGATCATCACGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTA
TGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTGGATGGCCAGAACATCTACAACGCCTGCTGC
ACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAATGTCAAGTACAACAATGATAAGAGCAGAGACT
ACACTCGACCTGACCTGCCCTCTGGAGACAGCCAGCCTTCACTAGACCAGACCATGGCAGCAGCCTTTGG
CCTCTCTGTCCCTAATGTCCATGGAGCCTTGGCCCCCCTGGCCATCCCGTCTGCTGCTGCTGCTGCTGCG
GCCAGCCGCATTGCCATCCCAGGGTTGGCAGGTGCTGGGAATTCTGTCCTTTTGGTCAGCAATCTGAACC
CTGAGAGAGTCACACCCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGAT
CCTGTTCAATAAGAAGGAGAACGCACTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGC
CACCTGAACGGGCACAAGCTGCACGGGAAGTCAGTGCGCATTACACTGTCCAAGCATCAGAGTGTGCAGC
TGCCTCGGGAGGGTCAGGAGGACCAGGGCCTGACCAAGGACTATGGCAGCTCCCCGCTGCACCGCTTCAA
GAAACCAGGCTCCAAGAACTTCCAGAACATCTTTCCACCCTCAGCTACCCTGCACCTCTCCAACATCCCG
CCCTCTGTGTCAGAGGACGACCTCAAGAGCCTCTTCTCCAGCAACGGTGGTGTGGTCAAAGGCTTCAAGT
TCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCTGTGCAGGCGCTGAT
TGAACTGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAG

Translation (489 aa):
MDGIVPDIAVGTKRGSDELFSTCVSNGPFIMSSSASAGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMV
NYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQS
PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACC
TLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAA
ASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMS
HLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIP
PSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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