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Report for CCDS57583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57583.1 Public Mus musculus 7 Tnrc6a 23 108 98 CCDS HistoryNCBI Gene:233833Re-query CCDS DB by CCDS ID:57583.1Re-query CCDS DB by GeneID:233833See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094053.6 ENSMUSP00000091595.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094053.6Link to Ensembl Protein Viewer:ENSMUSP00000091595.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000094053Re-query CCDS DB by Protein ID:ENSMUSP00000091595
Original member Current member NCBI NM_144925.3 NP_659174.3 Accepted alive Link to Nucleotide Sequence:NM_144925.3Link to Protein Sequence:NP_659174.3Re-query CCDS DB by Nucleotide ID:NM_144925Re-query CCDS DB by Protein ID:NP_659174Link to BLAST:NP_659174.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659174.3 1896 Q3UHK8 1896 100% 0 0

Chromosomal Locations for CCDS 57583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 123124328 123124332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123124668 123124715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123143750 123143837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123152164 123152185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123162494 123162877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123169536 123172118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123173233 123173409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123174144 123174319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123175426 123175458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123176824 123176904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123177682 123177733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123179717 123179859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123180540 123180677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123181319 123181447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123181956 123182033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123182246 123182453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123184156 123184287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123186563 123186721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123187353 123187493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123188788 123188895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123189845 123190066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123191500 123191570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123192059 123192198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123192579 123192951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5691 nt):
ATGAGAGAATTGGAAGCTAAAGCTACCAAAGACGTAGAGAGAAATCTTAGCAGGGATTTAGTGCAAGAAG
AAGAACAGTTGATGGAAGAAAAGAAAAAGAAAAAAGACGACAAGAAAAAGAAGGAAGCTGCTCAAAAGAA
GGCCACTGAACAAAAAATCAAAGTGCCAGAACAGATAAAGCCCAGTGTAAGCCAGCCTCAGCCTGCCAAC
TCTGATAACGGCACTTCCACAGCAACCAGCACTAATAATAATGCCAAGCGAGCTACAGCCAGCAATCAGC
AGCCGCCGCCACCGCAGCAGCAGCAGCCGCAGCAAGAGCAGCAGCAGCAGCAGCCACAAGCCTTGCCTCG
GTATCCACGTGAAGTACCTCCACGATTTCGCCACCAGGAACACAAACAGCTTCTGAAGAGGGGTCAGCAT
TTTCCTGTCATAGCAGCAAACTTGGGATCTGCTGTTAAGGTGTTAAACAGCCAATCAGAAAGCAGTGCTG
TAACAAATCAACAGCCACAAAATAACGGAGAGGTGCAGAACAGCAAGAGCCAGTCAGATATAAATCATAA
TACTTCAGGATCCCATTATGAAAATTGCCAGCGGGGACCTGTGTCTTCTACAAGTGACTGTAGCACAAGC
TGTAAGAATGCTGTAAACGACTTGTTGGAAAAAGAAGCATGGCCCTCAGCCCCTGGCAGTGATCCTGAGT
TGGCTCCAGAATGTATAGATGCTGATTCTGCCTCCAATTCTGAGTCAGAGAGAAACATCACTGTCATGGC
TTCAGGGAACACAGGTGGTGAGAAAGATGGCCTTCGGAACAGCACTGGACTTGGTTCTCAAAGCAAATTT
GTGGTTGGTAGCAGCAGCAATAATGTGGGCCATGGAAGTAGTACTGGCCCATGGGGCTTTCCCCATGGAG
CCCTAATAAGCACATGTCAGGTCTCTGTGGATGCTCCTGAAAGCAAACCAGAAAGTAGTAACAATAGGAT
GAATGCTTGGGGCACTGTAAGTTCTTCATCAAATGGAGGGTTAAATCCAAGCACTTTGAATTCAGCTAGC
AACCATGGTGCCTGGCCAGTATTAGAAAACAATGGACTTGCCCTAAAAGGGCCTGTAGGGAGTGGGAGTT
CTGGCATCAATATTCAGTGTAGTACCATAGGCCAGATGCCTAACAATCAGAATATCAACTCTAAAGTCAG
TGGCTCTTCTACCCATGGTACCTGGGGTAGCCTTCAGGAAACTTGTGAGCCTGAAGTAAGTGGTACACAG
AAGGTTTCATTCAGTGGTCAACCTCAGAATATCACCACTGAAACGACTGGACCAAATAACACTACTAACT
TTATGACCTCTAGTTTACCAAACTCCGGTTCAGTACAAAATAATGAACTGCCTACTAGTAATCCAGGGGC
CTGGCGTGTGAGCACAATGAATCATCCTCAGATACAGGCTCCGTCAGTTATGAATGGCACTTCCCTTTCT
CACCTTAGTAATGGAGAGTCAAAAACTGGAGGCTCCTACGGTACTACATGGGGTGCCTATGGTTCTAATT
ACTCTGGCGACAAATGTGCAGGCCCTAATGGCCAAGCCAATGGTGACACTGTGAATGCAACTCTAATGCA
GCCTGGCATAAATGGGCCTATGGGCACTAACTTTCAAGTTAATACAAATAAAGGGGGAGGTGTATGGGAG
CCTGGGACAGTGAATTCCCAGAGTTCACCATGGGGAAGTGGAAATGGTGCAAATTCTGGAGGAAGTCGAA
GAGGATGGGGAAGTCCTGCACAGAACACTGGCACTGGTCTATCCAGTGTCGAGTGGAACAAACTGCCTAG
CAACCAGCATTCCAATGACAGTGCAAATGGCAATGGTAAGAAGCTTACAAATGGATGGAAATCTACTGAG
GAAGACGATCAGGGTTCTGCCACATCTCAGACAAATGAGCAAAACAGTGTGTGGGCCAAAGCAGGAGGCA
CAGTGGAGAGTGATGGTAGTGCAGAGAGCACTGGACGCCTTGAAGAAAAAGTAACCGGGGAAAGTCAGAG
TAGAGATAGAAGAAAAATTGATCAGCACACATTACTCCAAAGCATTGTAAACAGAACTGACTTAGATCCA
CGTGTCCTATCCAACTCTGGGTGGGGACAGACTCCTATTAAGCAGAATACTGCCTGGGATACAGAGACAT
CACCAAGAGGGGAAAGAAAGACTGACAATGGGACAGAGGCCTGGGGAAGCTCTGCAACACAGACTTTTAA
CTCAGGGGCATGTACAGATAAGACTAGCCCTAATAGTAATGATACCTCATCTGTATCAGGGTGGGGTGAT
CCCAAACCTACTCTGAGGTGGGGAGATTCCAAAGGCTCAAACTGCCAGGGGGGGTGGGAAGATGACTCTG
CTGCTACAGGAATGATCAAGAGCAACCAGTGGGGGGGTTGCAAGGAAGACAAGTCTACATGGAATGATTC
GCAAAAGAGCAAACAAGGCTGGGGTGACGGACAAAAGTCAAGCCAAGGTTGGTCCATTTCTGCCGGTGAT
AACTGGGGAGAATCTTCCAGGAGTAACCATTGGGGTGAGGCCAATAAGAAATCCAGCTCAGGAGGCAGTG
ACAGTGACAGGTCCATTTCTGGTTGGAACGAACTTGGGAAAACTAGTTCTTTTACTTGGGGAAATAATAT
AAATCCAAATAACTCATCGGGATGGGATGAATCTTCTAAACCGAACTCTTCCCAGGGGTGGGGAGACCCT
CCAAAGTGTAATCAGTCTCTAGGTTGGGGAGATTCATCAAAGCCAGTTAGTTCTCCAGATTGGAACAAGC
AACAAGACATTGTTGGATCATGGGGAATCCCACCAGCCACCAGCAAGCCTCCTGGTACAGGCTGGCTCGG
GGGACCTATTCCTGCTCCAGCAAAGGAGGAAGAACCCACAGGCTGGGAGGAGCCATCCCCAGAATCTATA
CGAAGAAAAATGGAGATCGATGATGGAACTTCAGCTTGGGGAGATCCAAGCAAATACAACTACAAAAATG
TGAACATGTGGAATAAAAACATCCCGGAAGCCAGCGGCCGCTCAGACCAGCAAGCGCAGATGCACCGGCT
ATTGCCAGCCGCAAGTGCCGTCTCAAGCAAGGAGACCAGCAGTGGCTCTGGCTGGGGTGAGCCTTGGGCA
GAGCCTTCTACTCCAGCCACAACTGTGGATAATGGTACTTCAGCCTGGGGCAAGCCCATAGACAGTGGTC
CCAGCTGGGGAGAACCCATTACTGCAGCATCCAATGCATCCACGTGGGGCTCCAGCTCTGTTGGTCCACA
GTCATTAAGCAAATCTGGGCCCAAATCTATGCAAGATGGCTGGTGTGGTGATGATATGCCATTGCCTGGA
AGTCGACCCACTGGCTGGGAAGAGGAGGAGGATGTAGAGATTGGAATGTGGAACAGTAACTCATCTCAAG
AGCTTAACTCATCTTTAAATTGGCCACCATATACCAAGAAAATGTCATCAAAGGGTCTGAGTGGCAAAAA
AAGGAGAAGGGAAAGGGGAATGATGAAAGGCGGAAACAAACAAGAGGACGCATGGATAAATCCATTCGTT
AAACAGTTTTCAAATATCAGTTTTTCGAGAGACTCACCAGAAGAAAATGTACAGAGCAATAAGATGGATC
TTTCTGGAGGAATGTTACAAGACAAGCGGATGGAGATTGATAAACATAGCCTGAATATTGGTGATTACAA
TCGAACGGTCGGGAAAGGCCCTGGGTCTCGGCCTCAGATTTCCAAAGAGTCTTCCATGGAGCGCAATCCT
TACTTTGATAAGAATGGCAATCCCAATATGTTTGGTGTTGGAAACACAGCAGCACAACCCCGGGGCATGC
AGCAGCCTCCAGCACAACCTCTCAGTTCATCTCAGCCTAATCTTCGTGCTCAAGTGCCTCCTCCATTACT
CTCCCCTCAGGTTCCAGTTTCATTGCTGAAGTATGCACCAAACAACGGTGGCCTGAATCCGCTCTTTGGC
CCTCAACAGGTAGCCATGCTGAACCAGCTATCCCAACTAAACCAGCTTTCTCAGATCTCCCAGTTACAGC
GATTGTTAGCGCAGCAGCAGAGGGCACAGAGTCAGAGAAGCGCGCCTTCTGCTAACCGACAGCAGCAGGA
CCAGCAGGGTCGACCTCTTAGTGTGCAGCAGCAGATGATGCAACAGTCTCGTCAACTTGATCCAAGCCTG
CTGGTGAAGCAGCAGACTCCGCCTTCTCAGCAGCCGCTCCATCAGCCAGCCATGAAGTCCTTCCTTGACA
ATGTCATGCCCCACACTACACCCGAGCTGCAGAAAGGGCCATCGCCAGTAAATGCTTTCAGCAACTTTCC
TATAGGCTTGAACTCAAACTTGAATGTAAATATGGATATGAACAGTATTAAAGAGCCACAGTCACGACTA
AGGAAGTGGACAACAGTGGACAGCATGTCTGTGAACACGTCGTTGGATCAGAACTCCAGCAAACATGGTG
CTATTTCAAGTGGTTTTAGGCTGGAAGAGTCTCCATTTGTTCCCTATGACTTTATGAATAGCAGTACTTC
ACCAGCCAGTCCTCCAGGTTCAATAGGAGATGGCTGGCCACGTGCCAAATCGCCTAACGGCTCTAGCAGT
GTTAACTGGCCACCAGAATTTCGCCCTGGTGAACCATGGAAAGGTTATCCAAACATTGACCCTGAAACTG
ACCCTTACGTCACTCCTGGCAGTGTCATAAACAGTCTTTCAATTAATACTGTGCGGGAAGTTGACCACCT
CAGGGACAGGAACAGTGGGTCATCCTCATCCTTGAACACCACGCTGCCTTCAACTAGTGCCTGGTCATCC
ATTCGTGCCTCCAACTACAATGTTCCCCTCAGCAGTACAGCACAAAGCACTTCAGCCAGAAATAGTGATT
CCAAATTGACGTGGTCTCCTGGTTCAGTTACAAACACCTCTCTGGCTCATGAGCTGTGGAAAGTCCCTTT
GCCACCTAAAAACATCACTGCTCCGTCCCGCCCACCTCCGGGGCTGACTGGTCAGAAGCCACCCTTGTCT
ACGTGGGATAATTCTCCCCTTCGTGTAGGTGGAGGATGGGGAAATTCTGATGCCAGATATACCCCAGGCT
CCAGCTGGGGTGAGAGCAGCTCAGGGAGAATAACCAATTGGCTTGTTCTGAAGAACCTCACACCTCAGAT
TGATGGCTCAACTCTGCGCACCCTGTGCATGCAGCATGGCCCACTGATTACATTCCATCTGAACCTCCCA
CATGGAAATGCTCTGGTCCGTTACAGTTCAAAAGAAGAGGTAGTGAAGGCACAAAAGTCTCTGCACATGT
GTGTGCTGGGGAACACTACTATTCTCGCTGAGTTTGCCAGTGAAGAGGAGATCAGTCGCTTCTTTGCACA
AAGTCAGTCTCTGACCCCTTCTCCTGGCTGGCAGTCTCTCGGGTCCAGCCAGAGCCGGCTGGGCTCTCTC
GACTGTTCCCACTCGTTCTCCAGCCGGACTGATGTCAATCACTGGAATGGTGCTGGGCTGTCGGGAGCTA
ACTGTGGAGACCTTCACGGCACTTCCCTCTGGGGGACCCCACATTATTCCACAAGCCTGTGGGGTCCCCC
GAGCAGCGACCCCCGGGGAATTAGCAGCCCATCCCCCATTAATGCTTTTCTTTCTGTTGACCACCTGGGT
GGGGGTGGGGAGTCCATGTAA

Translation (1896 aa):
MRELEAKATKDVERNLSRDLVQEEEQLMEEKKKKKDDKKKKEAAQKKATEQKIKVPEQIKPSVSQPQPAN
SDNGTSTATSTNNNAKRATASNQQPPPPQQQQPQQEQQQQQPQALPRYPREVPPRFRHQEHKQLLKRGQH
FPVIAANLGSAVKVLNSQSESSAVTNQQPQNNGEVQNSKSQSDINHNTSGSHYENCQRGPVSSTSDCSTS
CKNAVNDLLEKEAWPSAPGSDPELAPECIDADSASNSESERNITVMASGNTGGEKDGLRNSTGLGSQSKF
VVGSSSNNVGHGSSTGPWGFPHGALISTCQVSVDAPESKPESSNNRMNAWGTVSSSSNGGLNPSTLNSAS
NHGAWPVLENNGLALKGPVGSGSSGINIQCSTIGQMPNNQNINSKVSGSSTHGTWGSLQETCEPEVSGTQ
KVSFSGQPQNITTETTGPNNTTNFMTSSLPNSGSVQNNELPTSNPGAWRVSTMNHPQIQAPSVMNGTSLS
HLSNGESKTGGSYGTTWGAYGSNYSGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVNTNKGGGVWE
PGTVNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTGLSSVEWNKLPSNQHSNDSANGNGKKLTNGWKSTE
EDDQGSATSQTNEQNSVWAKAGGTVESDGSAESTGRLEEKVTGESQSRDRRKIDQHTLLQSIVNRTDLDP
RVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGD
PKPTLRWGDSKGSNCQGGWEDDSAATGMIKSNQWGGCKEDKSTWNDSQKSKQGWGDGQKSSQGWSISAGD
NWGESSRSNHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNINPNNSSGWDESSKPNSSQGWGDP
PKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESI
RRKMEIDDGTSAWGDPSKYNYKNVNMWNKNIPEASGRSDQQAQMHRLLPAASAVSSKETSSGSGWGEPWA
EPSTPATTVDNGTSAWGKPIDSGPSWGEPITAASNASTWGSSSVGPQSLSKSGPKSMQDGWCGDDMPLPG
SRPTGWEEEEDVEIGMWNSNSSQELNSSLNWPPYTKKMSSKGLSGKKRRRERGMMKGGNKQEDAWINPFV
KQFSNISFSRDSPEENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRTVGKGPGSRPQISKESSMERNP
YFDKNGNPNMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGGLNPLFG
PQQVAMLNQLSQLNQLSQISQLQRLLAQQQRAQSQRSAPSANRQQQDQQGRPLSVQQQMMQQSRQLDPSL
LVKQQTPPSQQPLHQPAMKSFLDNVMPHTTPELQKGPSPVNAFSNFPIGLNSNLNVNMDMNSIKEPQSRL
RKWTTVDSMSVNTSLDQNSSKHGAISSGFRLEESPFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSS
VNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINSLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSS
IRASNYNVPLSSTAQSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLS
TWDNSPLRVGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLP
HGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSL
DCSHSFSSRTDVNHWNGAGLSGANCGDLHGTSLWGTPHYSTSLWGPPSSDPRGISSPSPINAFLSVDHLG
GGGESM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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