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Report for CCDS56756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56756.1 Public Mus musculus 11 Tbc1d10a 23 108 98 CCDS HistoryNCBI Gene:103724Re-query CCDS DB by CCDS ID:56756.1Re-query CCDS DB by GeneID:103724See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56756.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180088.1 ENSMUSP00000136453.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180088.1Link to Ensembl Protein Viewer:ENSMUSP00000136453.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180088Re-query CCDS DB by Protein ID:ENSMUSP00000136453
Original member NCBI NM_134023.1 NP_598784.1 Updated not alive Link to Nucleotide Sequence:NM_134023.1Link to Protein Sequence:NP_598784.1Re-query CCDS DB by Nucleotide ID:NM_134023Re-query CCDS DB by Protein ID:NP_598784
Current member NCBI NM_134023.2 NP_598784.1 Accepted alive Link to Nucleotide Sequence:NM_134023.2Link to Protein Sequence:NP_598784.1Re-query CCDS DB by Nucleotide ID:NM_134023Re-query CCDS DB by Protein ID:NP_598784Link to BLAST:NP_598784.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598784.1 500 P58802 500 100% 0 0

Chromosomal Locations for CCDS 56756.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4186891 4187099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4205757 4205856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4209926 4210033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4212141 4212247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4212785 4212899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4212978 4213043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4213557 4213746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4213837 4213991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4214701 4215153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCGAAAAGCAGCAGAGAGAATGGGCCGCGCGAGCCCGCAGCAGGCGGGAGCCTGTCTGGGACCCGGG
AAAGCCTGGCCCAGGGCCCCGACGCCGCCACCGCCGACGAGCTGAGCTCGCTCGGCTCCGACTCGGAGGC
CAACGGCTTCGCCGAGCGCCGCATCGACAAGTTCGGATTCATCGTGGGTTCGCAGGGCGCCGAGGGCGCA
CTGGAGGAAGTTCCCCTGGAGGTGCTGAGGCAGAGGGAGTCCAAGTGGCTGGACATGCTCAACAACTGGG
ACAAATGGATGGCCAAGAAGCACAAAAAGATTCGTCTTCGATGCCAGAAGGGCATCCCACCTTCTCTGCG
CGGACGGGCTTGGCAGTACCTGTCGGGAGGCAAGGTGAAACTTCAGCAGAACCCTGGGAAGTTTGATGAG
CTGGACATGTCTCCTGGGGACCCCAAGTGGCTAGATGTGATTGAGCGTGACCTGCACCGGCAGTTCCCAT
TCCATGAGATGTTCGTGTCCCGAGGAGGCCATGGCCAGCAGGACCTGTTCCGTGTGCTGAAGGCCTACAC
GCTGTACCGCCCTGAGGAGGGCTACTGCCAGGCGCAGGCACCCATTGCTGCTGTGCTCCTCATGCACATG
CCTGCTGAGCAAGCCTTCTGGTGTCTGGTACAAGTCTGTGAGAAGTACCTGCCTGGCTACTACAGTGAGA
AACTGGAGGCAATCCAGCTGGACGGCGAGATCCTCTTCTCACTGCTACAGAAGGTGTCCCCTGTGGCTCA
CAAGCACCTCAGCCGCCAGAAGATTGATCCCCTGCTGTACATGACAGAGTGGTTCATGTGTGCTTTTGCC
CGCACGCTGCCCTGGAGCTCTGTGCTGCGAGTTTGGGACATGTTCTTTTGTGAAGGAGTCAAGATCATCT
TCCGCGTGGGGCTGGTACTACTGAAGCATGCACTGGGCTCCCCAGAGAAGCTCAAAGCCTGCCAGGGCCA
GTATGAAACCATCGAGCAGCTGCGGAGCCTCAGCCCCAAGATCATGCAGGAAGCCTTCCTGGTTCAGGAG
GTGATAGAGCTGCCTGTGACGGAGCGCCAGATTGAGCGGGAGCACCTCATCCAGCTGCGGCGCTGGCAAG
AGACGCGTGGTGAGCTGGAGTGCCGCTCTCTGCCCAGGATGCATGGTGCCAAAGCCATCCTGGATGCAGA
GCCTGGTCCCAGGCCTGCCCTGCAACCTTCACCTTCCATCCGCCTACCGCCAGATGCAGCCCTCCTCAGC
TCCAAGGCTAAGCCGCACAAGCAGGCCCAGAAGGAGCAGAAGCGGACAAAGACCAGTGCGCAACTGGACA
AGTCCCCAGGCCTCAGTCAAGCCACAGTGGTGACTGCTGCAGGAGATGCATGTCCTCCTCAGGGTGTGTC
CCCAAAGGACCCGGTCCCCCAGGACCCTACTCCTCAGAACTTAGCCTGCCACCATTCCCAGGAGAGCCTG
ACCTCCCAGGAGAGTGAGGACACCTACTTGTAA

Translation (500 aa):
MAKSSRENGPREPAAGGSLSGTRESLAQGPDAATADELSSLGSDSEANGFAERRIDKFGFIVGSQGAEGA
LEEVPLEVLRQRESKWLDMLNNWDKWMAKKHKKIRLRCQKGIPPSLRGRAWQYLSGGKVKLQQNPGKFDE
LDMSPGDPKWLDVIERDLHRQFPFHEMFVSRGGHGQQDLFRVLKAYTLYRPEEGYCQAQAPIAAVLLMHM
PAEQAFWCLVQVCEKYLPGYYSEKLEAIQLDGEILFSLLQKVSPVAHKHLSRQKIDPLLYMTEWFMCAFA
RTLPWSSVLRVWDMFFCEGVKIIFRVGLVLLKHALGSPEKLKACQGQYETIEQLRSLSPKIMQEAFLVQE
VIELPVTERQIEREHLIQLRRWQETRGELECRSLPRMHGAKAILDAEPGPRPALQPSPSIRLPPDAALLS
SKAKPHKQAQKEQKRTKTSAQLDKSPGLSQATVVTAAGDACPPQGVSPKDPVPQDPTPQNLACHHSQESL
TSQESEDTYL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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