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Report for CCDS52754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52754.1 Public Mus musculus 9 Hyls1 23 108 98 CCDS HistoryNCBI Gene:76832Re-query CCDS DB by CCDS ID:52754.1Re-query CCDS DB by GeneID:76832See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115110.4 ENSMUSP00000110762.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115110.4Link to Ensembl Protein Viewer:ENSMUSP00000110762.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115110Re-query CCDS DB by Protein ID:ENSMUSP00000110762
Original member Current member NCBI NM_029762.1 NP_084038.1 Accepted alive Link to Nucleotide Sequence:NM_029762.1Link to Protein Sequence:NP_084038.1Re-query CCDS DB by Nucleotide ID:NM_029762Re-query CCDS DB by Protein ID:NP_084038Link to BLAST:NP_084038.1

Chromosomal Locations for CCDS 52754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35561174 35562104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35564063 35564076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCAGAAAAAAGACAAGCTTATAGTGTACCGGAAGCAATGAAGCAACTGATAGGACCTGGTGGACAAA
AATGGGCCAATATGGATCCTGAAGAACGAATGTTAGCTGCTGCTACAGCATTTACACGGATCTGTGCAGG
GCAGGGTGAAGGAGATTCACGGAGAGAAGCCCAGGCTGGCCAGTATGATCCCTACAGTAAAGCCTCAGTA
ACCCCAGGAAAGAGACCGGCTCTTCCTATGCACCTGCACTTCCCACATACAGCAAGCCGTGTCACTTCAT
CCACGGTGTCAGAGACTTCCCAAAAATGCAGAAAACCAGTGATGAAGAGGAAGGTGCTGCGAAGAAAGCC
AGACGGGGAAGTGCTAGTGACAGATGAGTCTGTTATCAGTGAATGTGAATCTGGAACAGAAAGTGATTTG
GGTCTCTGGGACTTGAGACACAGGTTCATGAACTTACAGTTCCAAGAAGGTACAGAATCCCCAGTTGTCA
CTTCACAAAAATTTAACCTACCATGTGAATACCAAGGAATTTCACAAGAAGATCAGCTCATTTGCTATCT
ACAAAGAGAAGAAATGGACCCTCCTGTTTATGAACAAGACTTGATTGTTGCCAGCAGACCCAAGTCCTTT
ATTCTCCCCAGACTGGATCAGTTAAGCCGAAACCGGGGCAAGATAGACCGAGTAGCCAGATATTTTGAGT
ACAAAAGAGACTGGGATTCAATGCGGTTTCCTGGTGAAGATCATAGAAAGGAGTTACGCTGGAGTGTCCG
AGGGCAAATGCTTTCCCGAACAGAACCTCCGTCCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTG
GTGCCAACTGAGAAGAAAAGATCTGCCCTTCGGTGGGGTGTGCGTTGTGACCTTGCAAATGGTGTCATGC
CCAAGAAGCTTCCCTTCCCGCTTTCTCCTTCTTAA

Translation (314 aa):
MAEKRQAYSVPEAMKQLIGPGGQKWANMDPEERMLAAATAFTRICAGQGEGDSRREAQAGQYDPYSKASV
TPGKRPALPMHLHFPHTASRVTSSTVSETSQKCRKPVMKRKVLRRKPDGEVLVTDESVISECESGTESDL
GLWDLRHRFMNLQFQEGTESPVVTSQKFNLPCEYQGISQEDQLICYLQREEMDPPVYEQDLIVASRPKSF
ILPRLDQLSRNRGKIDRVARYFEYKRDWDSMRFPGEDHRKELRWSVRGQMLSRTEPPSKPQHVYVPNNYL
VPTEKKRSALRWGVRCDLANGVMPKKLPFPLSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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