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Report for CCDS52455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52455.1 Public Mus musculus 7 Tnnt3 16 104 75 CCDS HistoryNCBI Gene:21957Re-query CCDS DB by CCDS ID:52455.1Re-query CCDS DB by GeneID:21957See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Sequence IDs included in CCDS 52455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000105955 ENSMUSP00000101575 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105955Link to Ensembl Protein Viewer:ENSMUSP00000101575Re-query CCDS DB by Nucleotide ID:ENSMUST00000105955Re-query CCDS DB by Protein ID:ENSMUSP00000101575
Original member Current member EBI,WTSI OTTMUST00000045216 OTTMUSP00000020330 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000045216Link to Vega Protein Viewer:OTTMUSP00000020330Re-query CCDS DB by Nucleotide ID:OTTMUST00000045216Re-query CCDS DB by Protein ID:OTTMUSP00000020330
Original member Current member NCBI NM_001163668.1 NP_001157140.1 Accepted alive Link to Nucleotide Sequence:NM_001163668.1Link to Protein Sequence:NP_001157140.1Re-query CCDS DB by Nucleotide ID:NM_001163668Re-query CCDS DB by Protein ID:NP_001157140Link to BLink:NP_001157140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157140.1 255 Q9QZ47-6 255 99.6078% 0 1

Chromosomal Locations for CCDS 52455.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 7Link to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142501638 142501654 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142501829 142501842 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142502740 142502757 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142504048 142504065 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142504250 142504264 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142505516 142505530 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142508335 142508353 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142510664 142510709 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142511257 142511373 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142511465 142511542 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142512036 142512149 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142512256 142512365 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142512532 142512622 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142514326 142514366 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 142515776 142515830 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGTCTGACGAGGAAACTGAACAAGTTGAGGAACAATACGAAGAGGAAGAGGAGGCCCAAGAGGAAGAAG
TC
CAGGAGGAAGAGGAAGTCCAAGAAGAGGAGAAACCAAGACCCAAACTTACTGCTCCTAAGATCCCGGA
A
GGGGAGAAAGTAGACTTTGATGACATCCAGAAGAAGCGTCAAAACAAGGACCTCATGGAGCTCCAAGCC
CTC
ATTGACAGCCACTTTGAAGCTAGAAAGAAAGAAGAAGAGGAGCTAATCGCACTTAAAGAAAGAATTG
AG
AAGCGCCGTGCAGAGAGGGCTGAGCAGCAAAGAATTCGCGCTGAGAAGGAGCGGGAACGCCAGAACAG
A
TTGGCGGAGGAGAAGGCCAGAAGAGAGGAGGAGGATGCCAAGAGGAGAGCTGAAGATGACATGAAGAAG
AAA
AAGGCTCTGTCCTCCATGGGTGCCAACTACAGCAGCTACCTGGCCAAGGCTGACCAGAAGAGAGGCA
AG
AAACAGACAGCCCGGGAAATGAAAAAGAAGATTCTTGCCGAAAGGCGCAAGCCTCTGAACATTGACCA
T
CTTAGCGATGACAAGCTGAGGGACAAGGCCAAGGAACTCTGGGATACCTTGTACCAACTGGAGACTGAC
AAA
TTCGAGTTTGGGGAGAAGCTGAAACGTCAGAAATATGATATCACCACCCTCAGGAGCCGCATTGACC
AA
GCCCAGAAGCACAGCAAGAAGGCCGGTGCCACAGCCAAGGGCAAAGTCGGTGGGCGCTGGAAGTAA


Translation (255 aa):
MSDEETEQVEEQYEEEEEAQEEEVQEEEEVQEEEKPRPKLTAPKIPEGEKVDFDDIQKKRQNKDLMELQA
L
IDSHFEARKKEEEELIALKERI
EKRRAERAEQQRIRAEKERERQNRLAEEKARREEEDAKRRAEDDMKK
K
KALSSMGANYSSYLAK
ADQKRGKKQTAREMKKKILAERRKPLNIDHLSDDKLRDKAKELWDTLYQLETD
K
FEFGEKLKRQKYD
ITTLRSRIDQAQKHSKKAGATAKGKVGGRWK



Links Key
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