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Report for CCDS51332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51332.1 Public Mus musculus 4 Cela3a 23 108 98 CCDS HistoryNCBI Gene:242711Re-query CCDS DB by CCDS ID:51332.1Re-query CCDS DB by GeneID:242711See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 51332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024200.6 ENSMUSP00000024200.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024200.6Link to Ensembl Protein Viewer:ENSMUSP00000024200.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024200Re-query CCDS DB by Protein ID:ENSMUSP00000024200
Original member Current member NCBI NM_001126318.1 NP_001119790.1 Accepted alive Link to Nucleotide Sequence:NM_001126318.1Link to Protein Sequence:NP_001119790.1Re-query CCDS DB by Nucleotide ID:NM_001126318Re-query CCDS DB by Protein ID:NP_001119790Link to BLAST:NP_001119790.1

Chromosomal Locations for CCDS 51332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 137401628 137401645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137402475 137402682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137403800 137403929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137404385 137404521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137405581 137405715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137405836 137405933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137408125 137408210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137409720 137409759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGCTCCGACTGCTGAGTTCCCTCCTGCTTGTGGCCCTTGCCTCAGGCTGTGGACAGCCTTCCCACAACC
CCTCCAGCCGAGTTGTCAATGGCGAGGAAGCTGTTCCCCACAGCTGGCCCTGGCAGGTCTCCCTTCAGTA
TGAGATGGGTGGGAGCTTCCACCATACCTGTGGTGGCTCCCTCATTACCCCTGACTGGGTTCTGACTGCG
GGCCACTGCATCATGCCTTATCTCAACTACCGGGTGGTACTTGGGGAGCATGAACATGGTGTGGAGGAGG
GCTCAGAGCAGGTGATCCCCATCAATGCTGGAGAACTCTTTGTGCACCCCAAGTGGAACTCCGAATGTGT
GAACTGTGGCAATAACATCGCTCTGGTCAAGCTCTCAAGAAGTGCCCAGCTGGGAGATGCAGTCCAGCTT
GCCTGCCTCCCTCCTGCTGGTGAAATCCTACCCAACGGAGCACCCTGTTACATCAGCGGCTGGGGCCGGC
TCTCTACCAATGGACCTCTGCCAACCAAGCTGCAGCAGGCCTTGCTGCCTGTGGTGGACTATGAACACTG
CTCCAGGTGGGACTGGTGGGGCCACTATGTGAAGAGGACCATGGTGTGCGCCGGCGGCTACATCCAAGCC
CACTCCTTATCTTCAGACACACATCAGCCCCGACTCTTGTCTCCATTGCAGGGTGACTCTGGAGGACCCC
TCAACTGTCCCGCTGACAATGGCACCTGGCAGGTCCATGGTATAGCCAGCTTCGTGTCCCCCTCGGGCTG
CAACACCCTGAAGAAGCCCACAATGTTCACCCGTGTCTCAGCCTTCATTGACTGGATTGAGGAGACCATT
GCCAACAACTAG

Translation (283 aa):
MLRLLSSLLLVALASGCGQPSHNPSSRVVNGEEAVPHSWPWQVSLQYEMGGSFHHTCGGSLITPDWVLTA
GHCIMPYLNYRVVLGEHEHGVEEGSEQVIPINAGELFVHPKWNSECVNCGNNIALVKLSRSAQLGDAVQL
ACLPPAGEILPNGAPCYISGWGRLSTNGPLPTKLQQALLPVVDYEHCSRWDWWGHYVKRTMVCAGGYIQA
HSLSSDTHQPRLLSPLQGDSGGPLNCPADNGTWQVHGIASFVSPSGCNTLKKPTMFTRVSAFIDWIEETI
ANN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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