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Report for CCDS51110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51110.1 Public Mus musculus 4 Sdcbp 23 108 98 CCDS HistoryNCBI Gene:53378Re-query CCDS DB by CCDS ID:51110.1Re-query CCDS DB by GeneID:53378See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029912.10 ENSMUSP00000029912.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029912.10Link to Ensembl Protein Viewer:ENSMUSP00000029912.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029912Re-query CCDS DB by Protein ID:ENSMUSP00000029912
Original member NCBI NM_001098227.1 NP_001091697.1 Updated not alive Link to Nucleotide Sequence:NM_001098227.1Link to Protein Sequence:NP_001091697.1Re-query CCDS DB by Nucleotide ID:NM_001098227Re-query CCDS DB by Protein ID:NP_001091697
Current member NCBI NM_001098227.2 NP_001091697.1 Accepted alive Link to Nucleotide Sequence:NM_001098227.2Link to Protein Sequence:NP_001091697.1Re-query CCDS DB by Nucleotide ID:NM_001098227Re-query CCDS DB by Protein ID:NP_001091697Link to BLAST:NP_001091697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091697.1 299 O08992 299 100% 0 0

Chromosomal Locations for CCDS 51110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6377092 6377142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6378966 6379047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6380990 6381099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6385026 6385187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6386533 6386708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6392946 6393117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6393637 6393728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6394510 6394564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGTCTCTTTATCCATCTCTTGAAGATTTGAAGGTAGACAAAGTAATTCAGGCTCAAACTGCTTATTCTG
CC
AATCCCGCCAGCCAAGCATTTGTTCTGGTGGATGCTTCTGCTGCTCTCCCTCCAGATGGAAATCTGTA
T
CCTAAACTGTATCCAGAGCTCTCTCAATACATGGGACTGTCTTTAAATGAAGCTGAAATATGTGAGAGC
ATG
CCCATGGTCTCTGGAGCACCAGCACAAGGGCAGTTGGTAGCAAGACCATCCAGTGTGAACTATATGG
TA
GCACCTGTGACAGGTAACGATGCTGGAATTCGGAGAGCAGAAATTAAGCAAGGGATCCGTGAAGTTAT
T
TTGTGTAAGGATCAAGATGGAAAAATTGGGCTCAGACTTAAGTCAATAGATAATGGTATATTTGTTCAA
CTC
GTCCAGGCTAATTCCCCAGCCTCCTTGGTTGGACTGAGATTTGGGGACCAGGTGCTCCAGATCAACG
GT
GAAAACTGTGCGGGCTGGAGCTCTGATAAGGCACACAAGGTGCTCAAGCAGGCGTTTGGAGAGAAGAT
C
ACCATGACGATCCGTGACAGGCCCTTTGAACGGACAGTTACTATGCATAAGGACAGCAGTGGACATGTT
GGC
TTTATCTTTAAAAGTGGAAAAATCACATCCATAGTAAAAGATAGTTCTGCTGCCAGAAACGGCCTCC
TC
ACTGATCACCACATCTGTGAGATCAACGGACAGAACGTCATTGGCTTGAAGGATGCTCAGATTGCAGA
T
ATACTGTCAACAGCTGGGACTGTGGTTACCATCACAATCATGCCTACTTTTATCTTCGAACACATTATT
AAA
CGGATGGCTCCCAGCATTATGAAAAGCCTGATGGATCACACCATTCCTGAAGTTTAA


Translation (299 aa):
MSLYPSLEDLKVDKVIQAQTAYSANPASQAFVLVDASAALPPDGNLYPKLYPELSQYMGLSLNEAEICES
M
PMVSGAPAQG
QLVARPSSVNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQ
L
VQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD
RPFERTVTMHKDSSGHV
G
FIFKSGKITSIVKDSSAARNGLLTDHHICEINGQNVIGLK
DAQIADILSTAGTVVTITIMPTFIFEHII
K
RMAPSIMKSLMDHTIPEV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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  UCSC Genome Browser
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