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Report for CCDS50599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50599.1 Public Mus musculus 2 Tlk1 23 108 98 CCDS HistoryNCBI Gene:228012Re-query CCDS DB by CCDS ID:50599.1Re-query CCDS DB by GeneID:228012See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038584.8 ENSMUSP00000035961.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038584.8Link to Ensembl Protein Viewer:ENSMUSP00000035961.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038584Re-query CCDS DB by Protein ID:ENSMUSP00000035961
Original member Current member NCBI NM_172664.3 NP_766252.2 Accepted alive Link to Nucleotide Sequence:NM_172664.3Link to Protein Sequence:NP_766252.2Re-query CCDS DB by Nucleotide ID:NM_172664Re-query CCDS DB by Protein ID:NP_766252Link to BLAST:NP_766252.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766252.2 766 Q8C0V0 766 100% 0 0

Chromosomal Locations for CCDS 50599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 70713989 70714165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70716612 70716719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70717782 70717893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70721074 70721209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70721558 70721727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70721907 70722088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70724002 70724083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70725480 70725577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70738421 70738487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70742054 70742242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70745503 70745639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70745934 70746044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70749235 70749327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70750435 70750524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70752235 70752330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70754440 70754486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70757474 70757549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70770004 70770075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70786877 70786995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70825193 70825331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGAGTGTCCAAAGTAGCAGTGGAAGTTTGGAGGGGCCGCCATCTTGGTCCCGGCTCTCCACGTCTCCAA
CCCCGGGCTCGGCGGCGGCGGCCAGGTCCCTGCTGAATCACACGCCGCCATCCGGGAGGCCCAGGGAAGG
TGCAATGGATGAGCTTCACAGTCTGGACCCAAGAAGGCAAGAATTATTGGAAGCAAGATTTACTGGAGTT
GCTACTGGGAGTACTGGGAGTACTGGGAGTTGCAGTGTTGGAGCAAAAGCTTCAACAAATAATGAAAGTT
CTAATCACAGTTTTGGAAGCTTAGGATCTCTAAGTGACAAAGAATCAGAGACACCAGAGAAGAAACAATC
AGAGTCATCCAGGGGAAGAAAGAGAAAAGCAGAAAGTCAGAATGAAAGTAGTCAGGGAAAAAGTATCGGG
GGACGTGGCCATAAGATCAGCGACTATTTTGAATACCAAGGTGGAAATGGCTCGAGTCCAGTAAGAGGCA
TCCCTCCAGCAATCCGTTCTCCGCAGAACTCACACTCACATTCCACTCCTTCCTCATCTGTTCGACCGAA
TAGCCCTTCTCCTACTGCATTAGCTTTCGGGGACCACCCTGTTGTACAACCAAAGCAGTTATCCTTTAAG
ATCACTCAAACTGATCTTACAATGCTGAAATTGGCAGCATTAGAAAGTACTAAAAATCAAGACCTGGAGA
AGAAGGAAGGCCGGATTGATGATCTGCTCAGGGCCAACTGTGATCTCAGGCGGCAAATAGATGATCAACA
GAAATTACTTGAAAAATACAAAGAACGATTAAATAAGTGCATATCTATGAGCAAGAAACTACTTATTGAA
AAGAGTACACAAGAAAAATTGTCTAGCAGAGAAAAGAGTATGCAAGATCGGTTGCGCCTTGGGCACTTTA
CCACAGTTAGACACGGCGCTTCCTTTACAGAACAGTGGACAGATGGTTTTGCATTTCAGAATCTTGTGAA
GCAACAAGAATGGGTGAATCAACAAAGGGAAGACATTGAACGGCAAAGAAAACTTCTAGGCAAACGCAAA
CCTCCCACAGCTAATAATTCTCAGGCACCTGCTACCAATTCTGAAGCCAAGCAAAGAAAGACCAAGGCAG
TCAATGGAGCGGAAAACGATCCCTTTGTTAGGCCAAATTTACCACAACTGCTGACTCTGGCAGAGTATCA
TGAACAAGAGGAAATTTTTAAACTTAGACTAGGACATCTCAAAAAGGAAGAGGCTGAAATCCAGGCGGAA
CTGGAGCGTTTGGAGAGGGTCCGGAACCTTCACATCCGAGAGCTGAAGAGAATAAACAATGAGGATAATT
CACAGTTCAAAGATCATCCAACGTTAAATGAAAGATATTTATTACTTCATCTGCTTGGGAGAGGCGGCTT
TAGTGAGGTCTATAAGGCATTCGACTTGTATGAGCAAAGATACGCTGCTGTGAAGATCCACCAGCTTAAT
AAGAGCTGGAGAGACGAGAAGAAAGAAAACTACCACAAACACGCTTGCCGAGAGTATCGAATACACAAGG
AACTGGACCACCCCAGAATAGTTAAACTCTATGATTACTTCTCCTTGGATACAGATACGTTTTGTACAGT
GCTAGAGTACTGTGAAGGCAATGACTTGGACTTCTACCTGAAGCAGCACAAGTTGATGTCTGAGAAAGAA
GCTCGGTCTATTGTGATGCAGATTGTGAATGCCTTACGCTATCTCAATGAAATCAAACCTCCTATTATAC
ATTATGACCTTAAGCCAGGAAATATCCTTCTGGTAGATGGAACAGCATGTGGAGAAATCAAAATCACTGA
TTTTGGTCTGTCCAAGATTATGGATGACGATAGTTACGGTGTTGATGGGATGGATCTGACTTCCCAGGGG
GCAGGCACTTACTGGTATTTACCTCCTGAGTGCTTTGTAGTTGGAAAAGAGCCACCGAAGATCTCCAACA
AGGTTGACGTGTGGTCAGTTGGGGTCATCTTCTTCCAGTGCCTCTATGGTAGAAAACCATTTGGTCACAA
TCAATCTCAACAAGACATTCTACAGGAAAACACAATACTGAAAGCCACAGAAGTCCAGTTCCCTGTAAAA
CCTGTTGTAAGCAGTGAAGCCAAGGCCTTCATAAGACGCTGTTTGGCTTACCGAAAAGAAGATCGATTTG
ATGTGCACCAGCTGGCAAATGACCCATACCTTCTGCCACACATGAGAAGATCAAATTCTTCAGGAAACTT
ACATATGTCTGGGCTGACAGCAACTCCCACACCTCCTTCTTCAAGCATAATTACTTACTGA

Translation (766 aa):
MSVQSSSGSLEGPPSWSRLSTSPTPGSAAAARSLLNHTPPSGRPREGAMDELHSLDPRRQELLEARFTGV
ATGSTGSTGSCSVGAKASTNNESSNHSFGSLGSLSDKESETPEKKQSESSRGRKRKAESQNESSQGKSIG
GRGHKISDYFEYQGGNGSSPVRGIPPAIRSPQNSHSHSTPSSSVRPNSPSPTALAFGDHPVVQPKQLSFK
ITQTDLTMLKLAALESTKNQDLEKKEGRIDDLLRANCDLRRQIDDQQKLLEKYKERLNKCISMSKKLLIE
KSTQEKLSSREKSMQDRLRLGHFTTVRHGASFTEQWTDGFAFQNLVKQQEWVNQQREDIERQRKLLGKRK
PPTANNSQAPATNSEAKQRKTKAVNGAENDPFVRPNLPQLLTLAEYHEQEEIFKLRLGHLKKEEAEIQAE
LERLERVRNLHIRELKRINNEDNSQFKDHPTLNERYLLLHLLGRGGFSEVYKAFDLYEQRYAAVKIHQLN
KSWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDTFCTVLEYCEGNDLDFYLKQHKLMSEKE
ARSIVMQIVNALRYLNEIKPPIIHYDLKPGNILLVDGTACGEIKITDFGLSKIMDDDSYGVDGMDLTSQG
AGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFFQCLYGRKPFGHNQSQQDILQENTILKATEVQFPVK
PVVSSEAKAFIRRCLAYRKEDRFDVHQLANDPYLLPHMRRSNSSGNLHMSGLTATPTPPSSSIITY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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