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Report for CCDS50378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50378.1 Public Mus musculus 19 Mark2 23 108 98 CCDS HistoryNCBI Gene:13728Re-query CCDS DB by CCDS ID:50378.1Re-query CCDS DB by GeneID:13728See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164205.7 ENSMUSP00000127827.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164205.7Link to Ensembl Protein Viewer:ENSMUSP00000127827.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164205Re-query CCDS DB by Protein ID:ENSMUSP00000127827
Original member NCBI NM_001080388.2 NP_001073857.1 Updated not alive Link to Nucleotide Sequence:NM_001080388.2Link to Protein Sequence:NP_001073857.1Re-query CCDS DB by Nucleotide ID:NM_001080388Re-query CCDS DB by Protein ID:NP_001073857
Current member NCBI NM_001080388.3 NP_001073857.1 Accepted alive Link to Nucleotide Sequence:NM_001080388.3Link to Protein Sequence:NP_001073857.1Re-query CCDS DB by Nucleotide ID:NM_001080388Re-query CCDS DB by Protein ID:NP_001073857Link to BLAST:NP_001073857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073857.1 722 Q05512-3 722 99.8615% 0 1

Chromosomal Locations for CCDS 50378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7277090 7277450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7278042 7278086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7280998 7281255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7282726 7282823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7283033 7283205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7283436 7283568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7284465 7284577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7284660 7284759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7284869 7284988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7285732 7285968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7286569 7286625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7286834 7286904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7287001 7287066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7287330 7287378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7290316 7290369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7290603 7290782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7341168 7341221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGTCCAGCGCTCGGACCCCCCTACCCACGCTGAACGAAAGGGACACGGAGCAGCCCACCTTGGGACACC
TTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCA
GCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCC
CGGCACATCCTGACGGGGAAAGAGGTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCC
TACAGAAACTGTTCCGAGAAGTAAGAATAATGAAGGTTTTGAATCATCCCAACATAGTTAAGTTGTTTGA
AGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCGGAGAGGTGTTTGATTAC
CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAGATAGTGTCTGCTGTGC
AGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGGCAGAAAACCTGCTCCTGGATGCTGATAT
GAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGT
GGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCT
GGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAGGA
GCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTG
CTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGCAAATTATGAAAGATCGGTGGA
TGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCG
GCGGACAGAGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGG
TACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGCTGGAAGGTGATACCATCA
CTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCG
CAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGGCCGTCCCTGCCATTCCCACCTCGAAT
TCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAG
CCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCC
CTCCACGAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGC
CTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAGCACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCT
CCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCG
AAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCA
GCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCA
AGTTTGTCCGCAGGAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCAGACCTCACGTGGT
AGGCAGTGGAGGCACTGACAAGGACAAGGAGGAGTTTCGGGAGGCCAAGCCTCGCTCCCTGCGCTTCACC
TGGAGCATGAAGACCACGAGCTCTATGGAGCCCAATGAGATGATGCGGGAGATCCGCAAGGTGCTGGACG
CCAACAGCTGCCAAAGCGAGCTGCACGAGCGGTACATGCTACTGTGCGTGCATGGCACACCAGGCCACGA
GAACTTTGTGCAGTGGGAGATGGAGGTGTGCAAACTGCCCCGGCTGTCTCTCAACGGTGTTCGGTTTAAG
CGGATATCGGGCACTTCCATGGCCTTCAAAAACATTGCCTCCAAAATAGCCAATGAGCTGAAGCTTTAA

Translation (722 aa):
MSSARTPLPTLNERDTEQPTLGHLDSKPSSKSNMLRGRNSATSADEQPHIGNYRLLKTIGKGNFAKVKLA
RHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDY
LVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC
GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENL
LKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQR
YNEVMATYLLLGYKSSELEGDTITLKPRPSADLTNSSAPSPSHKVQRSVSANPKQRRSSDQAVPAIPTSN
SYSKKTQSNNAENKRPEEETGRKASSTAKVPASPLPGLDRKKTTPAPSTNSVLSTSTNRSRNSPLLDRAS
LGQASIQNGKDSTAPQRVPVASPSAHNISSSSGAPDRTNFPRGVSSRSTFHAGQLRQVRDQQNLPYGVTP
ASPSGHSQGRRGASGSIFSKFTSKFVRRNLNEPESKDRVETLRPHVVGSGGTDKDKEEFREAKPRSLRFT
WSMKTTSSMEPNEMMREIRKVLDANSCQSELHERYMLLCVHGTPGHENFVQWEMEVCKLPRLSLNGVRFK
RISGTSMAFKNIASKIANELKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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