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Report for CCDS49199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49199.1 Public Mus musculus 12 Macc1 23 108 98 CCDS HistoryNCBI Gene:238455Re-query CCDS DB by CCDS ID:49199.1Re-query CCDS DB by GeneID:238455See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 49199.1
The exon combination of this CCDS representation is inferred based on orthologous transcript alignments, e.g., human AJ313524.1, BC137090.1 or BC144470.1. Partial mouse transcript data also support this representation, e.g., mRNA accession AK028965.1, and RNA-Seq data from the ENCODE project.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 49199.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048880.6 ENSMUSP00000042955.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048880.6Link to Ensembl Protein Viewer:ENSMUSP00000042955.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048880Re-query CCDS DB by Protein ID:ENSMUSP00000042955
Original member Current member EBI ENSMUST00000222058.1 ENSMUSP00000152123.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222058.1Link to Ensembl Protein Viewer:ENSMUSP00000152123.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222058Re-query CCDS DB by Protein ID:ENSMUSP00000152123
Original member Current member EBI ENSMUST00000222784.1 ENSMUSP00000152677.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222784.1Link to Ensembl Protein Viewer:ENSMUSP00000152677.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222784Re-query CCDS DB by Protein ID:ENSMUSP00000152677
Original member Current member EBI ENSMUST00000221917.1 ENSMUSP00000152808.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221917.1Link to Ensembl Protein Viewer:ENSMUSP00000152808.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221917Re-query CCDS DB by Protein ID:ENSMUSP00000152808
Original member Current member EBI ENSMUST00000221866.1 ENSMUSP00000152883.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221866.1Link to Ensembl Protein Viewer:ENSMUSP00000152883.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221866Re-query CCDS DB by Protein ID:ENSMUSP00000152883
Original member Current member NCBI NM_001163136.1 NP_001156608.1 Accepted alive Link to Nucleotide Sequence:NM_001163136.1Link to Protein Sequence:NP_001156608.1Re-query CCDS DB by Nucleotide ID:NM_001163136Re-query CCDS DB by Protein ID:NP_001156608Link to BLAST:NP_001156608.1

Chromosomal Locations for CCDS 49199.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 119443410 119443524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119445614 119447652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119450245 119450433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119465460 119465672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGCTAATCAGTGAAAGAGCCTATTGTTGGCCACGAGAAATTGGTCGAAGTAGATCTGAAGGAAATTTGA
TT
GACATGGAAGCCTCGAAACGCTCAAAAAATCAAAATATTACAGCACGGCAAGGGCTAGGCTTGCCTCA
C
AACTGGCCAGATGCTCCTACCCTCCATCGTGATAGTGATGCCAAAGCTACAAATCCATTCTGGAAGGAA
CTG
TCTGCCTCAAACCCATTTCTGGAGGACATCACGCAGCTAAGAAACAACAAAAAGAGAGATAATATGT
CT
ATCTTGAAGGAAGATCCTTTTCTTTTTTTAAGACAAATAGAAACAGAAAATTCTTTTGACTCCTCTGG
T
GATGAACTTGACATGGATCAGGGGTTTAAGTCATCTTCCTCTCGGAAGTCAGGAAGGTCTAAGAGTGTT
TCT
GAACTCCTGGATGTTTTAGGTGATAGGACACACACTCATCAAAGTATACATAGCTCTGATCAGATCC
TA
ATACAAGACTTAGAATGGCTACAAAATGACCGAGAAGCATATAAAATGGCTTGGCTTAGTCAACGTCA
G
TTGGCTCGCTCTTGCCTAGATCTGAATACAATTAATCAGAGTCCTGGGTGGGCTCAAACACAAATTGCA
GAG
ACCATTGCAGTTTGTAAATTAAATCACCAAGGAGGGTCAGTCCAATTACCCGACTCAGACATCACTA
TT
CATATACCCCAAGGACATATAGCTGTGGGAGAATTCCAGGAGGTATCTCTGAGAGCATTTCTGGATCC
T
CCACCAAAGCTGAACCATGATCTCTCTTGTACTGTAAGCCCTCTCTTGGAAATCAGGTTAAGCAATCTG
AAT
ACCATGGAAGCTATTTTGTTGGAGATGAAAACTGGAGCAGAAGTAAAAACAGATCCTCTGAGCCAAG
TC
ATGACTAAAATGGTGTGTTTGTACAGCCTGGACAGAGAAGGCCCTTTCCAAGCATTAAACACCTGCTA
T
ATCTACAAAGATACCATCCAAGCTAAGCTTCTTGACCTGAGCCATGTAATGTATATAGTCATAGCTGTA
CAA
GCTACGATCATTCATCCACCAGCTGCTACTATTTGGGATTATATCCACAAAACCACCTCTATTGGAA
TT
TATGGACCTAAATATCTCCATCCAAGCTTTACTGCTGTTTTCACTGTTTGTGGACACAACTATGTGCC
A
GGAAAGTTTACAGTCTCTGACATTAGGAAGGGTGGAAAAAACACATCTCCAGTCGTATTTCACCTCTGG
GGG
AAGCATTCATTTTCACTTGACAAGCCAAAAGATTTAATTATTTCAGCTTTTTCGTGTGATCCTGATT
TT
GAAGTAAAGGAAGAGGGAGAAAGAAAAGTAATTGCACAAAGGCAATTGGAAGCAGGTGTGGTAGTTCA
T
CAACAAGTTTTCTTTTCTTCAATTGATCACAGAGAGATGCACTTGTTTGTTTTCCGGGTTCAGGTAAAG
ACC
CCCAATGAAAAACCAGTGACACAGTTCTTTGTCACTTCACCTGATCCATCCCCAAATCTAAAAAGGT
TC
TCATATCTGCCAGGATTTTTCCAGAAGAGAGAAGACAAGAGAGTGCCTTTATTGTCGACAGGACTTGT
T
AAGTATCCCACTTTCCAAGATAAAAAATTGAACTTTACCAATTATGGGGTTGCACTGAAGACAGTACTG
AGG
CAAAATAAGATTGACTATTTGCTTGAATATTTAAAAGGGGACACAATTGCCCTTCTTGGAGAAGGTA
CA
GTAAGAGCCATAGGACAGTCCAAAGTGAAAGAATGGTACGTAGGAGTCCTCCGAGGTAAGATCGGACT
C
GTGCATTGTAAAAATGTCAAAGTGATTTCTAAAGAACAAGTGATGTCAATGTCTGATGGCATTTTGACA
ACC
AAGAATCTTCTGGAACAAATTGCCTTGCCATTTAAAAGTCTGACTTATATATACTCTGTTGTATTGA
CC
TTGGTGTCAGAAAAAGTTCACGACTGGAAAGTTTTAGCTAATGTCCTGGGTTACTCACATCTGGCACA
G
GAAGATTTTAATAGAATTCAAGCAGACAAGGAACCAGAAAGGGTTTCTTACGTTGTCAAGAAGTTAAAG
GAA
GATTGCCATGAAGATAGAAATACCAGGAAGTTCCTTTATGAACTGATTGTGGCTCTGCTAAAAATGG
AT
TGCCAAGAGTTAGTGGCACATCTTATCCAAGAGGCTGTTATTCTGACTTCAGCTGTGAAACTTGGAAG
A
AGCTGGAGGGAACTTGCTGAGAAATCTGCAGGACTCACTAAGCATCAGATGCAGGCATATGAAATTCCT
CAC
CGAGGAAAATCTGGAGATGTTTCAGCAGAGATGATGTGGAAACCTGCCTATGATTTTCTCTATGCAT
GG
AGTTTTCACTATGGAAATAGCTACAGAGATGTGTTACAAGATCTTCAATCAGCTTTGGACAGAATGAA
A
AACCCTGTCACTAAACGGTGGAGAGATTTAACTGGAACTTTAATACTTATAAATTCTTTAGAGATTCTG
AGA
GTGACTGCTTTCTCTACTTCTCAGGAAATATAG


Translation (851 aa):
MLISERAYCWPREIGRSRSEGNLIDMEASKRSKNQNITARQGLGLPHNWPDAPTLHRDSDAKATNPFWKE
L
SASNPFLEDITQLRNNKKRDNMSILKEDPFLFLRQIETENSFDSSGDELDMDQGFKSSSSRKSGRSKSV
S
ELLDVLGDRTHTHQSIHSSDQILIQDLEWLQNDREAYKMAWLSQRQLARSCLDLNTINQSPGWAQTQIA
E
TIAVCKLNHQGGSVQLPDSDITIHIPQGHIAVGEFQEVSLRAFLDPPPKLNHDLSCTVSPLLEIRLSNL
N
TMEAILLEMKTGAEVKTDPLSQVMTKMVCLYSLDREGPFQALNTCYIYKDTIQAKLLDLSHVMYIVIAV
Q
ATIIHPPAATIWDYIHKTTSIGIYGPKYLHPSFTAVFTVCGHNYVPGKFTVSDIRKGGKNTSPVVFHLW
G
KHSFSLDKPKDLIISAFSCDPDFEVKEEGERKVIAQRQLEAGVVVHQQVFFSSIDHREMHLFVFRVQVK
T
PNEKPVTQFFVTSPDPSPNLKRFSYLPGFFQKREDKRVPLLSTGLVKYPTFQDKKLNFTNYGVALKTVL
R
QNKIDYLLEYLKGDTIALLGEGTVRAIGQSKVKEWYVGVLRGKIGLVHCKNVKVISKEQVMSMSDGILT
T
KNLLEQIALPFKSLTYIYSVVLTLVSEKVHDWKVLANVLGYSHLAQEDFNRIQADKEPERVSYVVKKLK
E
DCHEDRNTRKFLYELIV
ALLKMDCQELVAHLIQEAVILTSAVKLGRSWRELAEKSAGLTKHQMQAYEIP
H
RGKSGDVSAE
MMWKPAYDFLYAWSFHYGNSYRDVLQDLQSALDRMKNPVTKRWRDLTGTLILINSLEIL
R
VTAFSTSQEI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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