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Report for CCDS49115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49115.1 Public Mus musculus 12 Pgf 23 108 98 CCDS HistoryNCBI Gene:18654Re-query CCDS DB by CCDS ID:49115.1Re-query CCDS DB by GeneID:18654See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004913.6 ENSMUSP00000004913.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004913.6Link to Ensembl Protein Viewer:ENSMUSP00000004913.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000004913Re-query CCDS DB by Protein ID:ENSMUSP00000004913
Original member Current member NCBI NM_008827.3 NP_032853.1 Accepted alive Link to Nucleotide Sequence:NM_008827.3Link to Protein Sequence:NP_032853.1Re-query CCDS DB by Nucleotide ID:NM_008827Re-query CCDS DB by Protein ID:NP_032853Link to BLAST:NP_032853.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032853.1 158 P49764 158 100% 0 0

Chromosomal Locations for CCDS 49115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85167411 85167414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85169358 85169417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85169511 85169540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85171375 85171454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85171660 85171856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85175756 85175795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85176898 85176963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGCTGGTCATGAAGCTGTTCACTTGCTTCTTACAGGTCCTAGCTGGGTTGGCTGTGCATTCCCAGGGGG
CCCTGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGGTGCCTTTCAACGAAGTGTGGGGTCGCAGCTA
CTGTCGGCCCATGGAGAAGCTGGTGTACATCTTGGATGAATACCCTGATGAGGTGTCTCACATATTCAGT
CCGTCCTGTGTCCTTCTGAGTCGCTGTAGTGGCTGCTGTGGTGATGAAGGTCTGCACTGTGTGCCGATAA
AGACAGCCAACATCACTATGCAGATCTTGAAGATTCCCCCCAATCGGGATCCACATTTCTATGTGGAGAT
GACATTTTCTCAGGATGTGCTCTGTGAATGCAGACCTATTCTGGAGACGACAAAGGCAGAAAGGAGGAAA
ACCAAGGGGAAGAGGAAGAGGAGTAGAAACTCACAGACTGAGGAACCCCACCCGTGA

Translation (158 aa):
MLVMKLFTCFLQVLAGLAVHSQGALSAGNNSTEVEVVPFNEVWGRSYCRPMEKLVYILDEYPDEVSHIFS
PSCVLLSRCSGCCGDEGLHCVPIKTANITMQILKIPPNRDPHFYVEMTFSQDVLCECRPILETTKAERRK
TKGKRKRSRNSQTEEPHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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