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Report for CCDS40684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40684.1 Public Mus musculus 9 Mns1 23 108 98 CCDS HistoryNCBI Gene:17427Re-query CCDS DB by CCDS ID:40684.1Re-query CCDS DB by GeneID:17427See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034746.9 ENSMUSP00000034746.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034746.9Link to Ensembl Protein Viewer:ENSMUSP00000034746.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034746Re-query CCDS DB by Protein ID:ENSMUSP00000034746
Original member NCBI NM_008613.3 NP_032639.1 Updated not alive Link to Nucleotide Sequence:NM_008613.3Link to Protein Sequence:NP_032639.1Re-query CCDS DB by Nucleotide ID:NM_008613Re-query CCDS DB by Protein ID:NP_032639
Current member NCBI NM_008613.4 NP_032639.1 Accepted alive Link to Nucleotide Sequence:NM_008613.4Link to Protein Sequence:NP_032639.1Re-query CCDS DB by Nucleotide ID:NM_008613Re-query CCDS DB by Protein ID:NP_032639Link to BLAST:NP_032639.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032639.1 491 Q61884 491 100% 0 0

Chromosomal Locations for CCDS 40684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72438677 72438679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72439240 72439461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72444843 72444970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72446207 72446309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72448529 72448758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72449151 72449367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72449452 72449559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72452581 72452838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72456778 72456903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72458313 72458393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGCGACCAAAAAGAGAGCTTTGAGCTTTAGTGAAAAGCATCAGAAGTTAGTAGATGAAAAATTCCGCA
AA
TCATTGAACATACAAGTCATGAATAAGTTAGAGAGGCAAGCCAAGAACCAAGTGGTGCAAAATGAAAA
C
GACGAGAAGGTGGAACGCCAGAGGTTCCTCAGAGTGCTGCAGAATGAGCAGTTTGAGCTCGACATGGAA
GAA
GCCATCCAAAAAGCAGAAGCAAACAAGATGCTGAGGGATCGACAGCTTGAGCAGGAAGAGAGACTTG
CA
AACGAACTGGCCAGACTGAAGCACGAGAGTCTGAAGGATAAGAAGATGAGGCAGCAAGTGAGAGAGAA
C
AGCATTGAGCTCAGAGAGTTGGAGCAGAAACTGAAAGCCGCCTACATGAACAAAGAGAGAGCAGCCCAG
ATC
GTGGAGAAGGACGCCATGAAGTATGAGCAGATGAAACGTGATGCGGAGATAGAAAGGATCATGATGG
AG
GAGCACGATAGGCTGCTGAAGGAAGAGAGCGCCAAGCAAGAGCGGCGGAACAAGGAGAGGGCACAGTA
C
TACCTGGACCTGGAGAAGCAGCTGGAAGATCAAGAGAGGAGGAAGCAGGAGGCATACGAGCAGCTGCTG
AAG
GAGAAACTCATGATAGACGAAATTGTCAGGAAGATCTACGAGGAAGACCAGGTGGAAAGACAGCAAA
AA
TTAGAAAAAAAGAATGCAATTCAGAAGTATATTGAAGAATTCCAGAGGGCACAAGACTTCTGGAGACA
A
AAGAAGCGTGAGGAGATGGAGGAAGAGAACCGGAAAATCATAGAGTTTGCAAACATACAGGAGCAAAGA
GAA
GGCGAGCGGATGGCCAGAGTTCACGAGATCGAGGAAAAGAGGGTCCAGCGTCAGAATTTGCTGATGA
AG
CAGCTGGAGGAAACACTGCGGCAGCGGGATGACCTGGAGCAAGTGCGGCAGGAGCTGTACCAGGAGGA
G
CAGGCAGAGATCATCAAACTGAAAGTGAAAGAAGAAGCAGAGCTGAGACTGAGGAGGCAGAGGGAGATG
AAG
CAAGACTTTGAAGACCAAATGGCACTGAAGGAACTCATACTGCAGGCTGCAAAAGAGGAGGAAGAGA
CC
TTTAAGAAAGCCATGCTGGCCAAGTTTGCCGAAGATGACCGCATTGAGCTCATGAATGCCCAGAAACA
G
CGAATGAAGCAGCTGGAGCACAAACGCGCCGTGGAGAAACTCATTGAAGAACGCCGGAGCCAGTTCCTC
GCA
GACAAACAACGTGAGCTGGAGGAATTGCAACTACAGCAAAGGCGGCAGGGCTGCATCAATGAGATTA
TT
GAAGAAGAGAGGCTGAGACTCCTCAAAGAACATGCTGCAAAGTTACTAGGCTATCTCCCCAAAGGAGT
G
TTTAAAAGAGAAGACGATGTTGACATGCTTGGTGAAGAGTTCAGGAAGGCCTATCAGAAAAGGGATGGA
GTC
TGA


Translation (491 aa):
MATKKRALSFSEKHQKLVDEKFRKSLNIQVMNKLERQAKNQVVQNENDEKVERQRFLRVLQNEQFELDME
E
AIQK
AEANKMLRDRQLEQEERLANELARLKHESLKDKKMRQQVRENSIELRELEQKLKAAYMNKERAAQ
I
VEKDAMKYEQM
KRDAEIERIMMEEHDRLLKEESAKQERRNKERAQYYLDLEKQLEDQERRKQEAYEQLL
K
EKLMIDEIVRKIYEEDQ
VERQQKLEKKNAIQKYIEEFQRAQDFWRQKKREEMEEENRKIIEFANIQEQR
E
GERMARVHEIEEKRVQRQNL
LMKQLEETLRQRDDLEQVRQELYQEEQAEIIKLKVKEEAELRLRRQREM
K
QDFEDQMALKELILQAAKEEEETFKKAMLAKFAEDDRIELMNAQKQRMKQLEHKRAVEKLIEERRSQFL
A
DK
QRELEELQLQQRRQGCINEIIEEERLRLLKEHAAKLLGYLPKGVFKREDDVDMLGEEFRKAYQKRDG
V




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 Genome Browser Links:   Ensembl Genome Browser
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