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Report for CCDS40318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40318.1 Public Mus musculus 8 Rbpms 23 108 98 CCDS HistoryNCBI Gene:19663Re-query CCDS DB by CCDS ID:40318.1Re-query CCDS DB by GeneID:19663See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033995.13 ENSMUSP00000033995.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033995.13Link to Ensembl Protein Viewer:ENSMUSP00000033995.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033995Re-query CCDS DB by Protein ID:ENSMUSP00000033995
Original member Current member NCBI NM_001042675.2 NP_001036140.1 Accepted alive Link to Nucleotide Sequence:NM_001042675.2Link to Protein Sequence:NP_001036140.1Re-query CCDS DB by Nucleotide ID:NM_001042675Re-query CCDS DB by Protein ID:NP_001036140Link to BLAST:NP_001036140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036140.1 220 Q9WVB0-2 220 100% 0 0

Chromosomal Locations for CCDS 40318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33804051 33804182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33806717 33806850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33834304 33834454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33862986 33863048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33864333 33864371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33866327 33866404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33929476 33929541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGAACGGCGGCGGCAAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCC
GGACCCTATTTGTCAGCGGTCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGACCATT
CAAGGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTTGACAGT
CGCTCAGAAGCAGAGGCCGCAAAGAACGCTTTGAACGGCATCCGCTTCGATCCTGAAATCCCGCAAACGC
TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAG
TACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCATATGAGCTCACAGTACCTGCACTT
TACCCCAGTAGCCCTGAAGTTTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTTCCTC
CTCCTGCCGCTTTCACCTACCCCGCTTCACTGCATGCCCAGTGTTTCTCTCCAGAGGCAAAGCCCAACAC
ACCTGTCTTTTGTCCACTTCTTCAGCAGATTAGATTTGTCTCTGGGAATGTGTTTGTCACATATCAACCT
ACTGCAGACCAGCAGAGGGAGCTCCCGTGTTGA

Translation (220 aa):
MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDS
RSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPAL
YPSSPEVWAPYPLYPAELAPALPPPAAFTYPASLHAQCFSPEAKPNTPVFCPLLQQIRFVSGNVFVTYQP
TADQQRELPC


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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