NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40179.1 Public Mus musculus 7 Sigirr 23 108 98 CCDS HistoryNCBI Gene:24058Re-query CCDS DB by CCDS ID:40179.1Re-query CCDS DB by GeneID:24058See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097958.2 ENSMUSP00000095571.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097958.2Link to Ensembl Protein Viewer:ENSMUSP00000095571.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097958Re-query CCDS DB by Protein ID:ENSMUSP00000095571
Original member Current member EBI ENSMUST00000209294.1 ENSMUSP00000147541.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209294.1Link to Ensembl Protein Viewer:ENSMUSP00000147541.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209294Re-query CCDS DB by Protein ID:ENSMUSP00000147541
Original member NCBI NM_001355055.1 NP_001341984.1 Updated not alive Link to Nucleotide Sequence:NM_001355055.1Link to Protein Sequence:NP_001341984.1Re-query CCDS DB by Nucleotide ID:NM_001355055Re-query CCDS DB by Protein ID:NP_001341984
Current member NCBI NM_001355055.2 NP_001341984.1 Accepted alive Link to Nucleotide Sequence:NM_001355055.2Link to Protein Sequence:NP_001341984.1Re-query CCDS DB by Nucleotide ID:NM_001355055Re-query CCDS DB by Protein ID:NP_001341984Link to BLAST:NP_001341984.1
Original member NCBI NM_023059.3 NP_075546.2 Updated not alive Link to Nucleotide Sequence:NM_023059.3Link to Protein Sequence:NP_075546.2Re-query CCDS DB by Nucleotide ID:NM_023059Re-query CCDS DB by Protein ID:NP_075546
Current member NCBI NM_023059.4 NP_075546.2 Accepted alive Link to Nucleotide Sequence:NM_023059.4Link to Protein Sequence:NP_075546.2Re-query CCDS DB by Nucleotide ID:NM_023059Re-query CCDS DB by Protein ID:NP_075546Link to BLAST:NP_075546.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341984.1 409 Q9JLZ8-1 409 100% 0 0
NP_075546.2 409 Q9JLZ8-1 409 100% 0 0

Chromosomal Locations for CCDS 40179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141091338 141091501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141091803 141091992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141092155 141092305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141092381 141092483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141092586 141092729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141092978 141093118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141093200 141093330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141093727 141093925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141094782 141094788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGCAGGTGTCTGTGACATGGCCCCTAATTTCCTTTCCCCATCTGAAGACCAGGCCTTGGGTCTTGCCC
TTGGCAGAGAAGTTGCTTTGAATTGCACAGCTTGGGTGTTCTCTAGGCCCCAGTGTCCCCAGCCATCAGT
GCAGTGGCTGAAAGATGGTCTGGCATTGGGCAATGGAAGCCACTTCAGCCTCCATGAGGACTTCTGGGTC
AGCGCCAACTTCTCAGAGATTGTGTCCAGTGTCCTGGTGCTCAACTTGACCAATGCAGAGGACTATGGAA
CCTTCACCTGTTCTGTCTGGAATGTCAGCTCCCATTCCTTCACTCTTTGGCGAGCTGGCCCTGCTGGCCA
TGTGGCTGCAGTACTGGCTTCCCTCCTGGTCCTGGTGGTTCTGCTGCTGGTGGCCCTGCTCTATGTTAAG
TGTCGGCTGAACATGCTGCTTTGGTACCAAGACACTTACGGGGAGGTGGAGATGAACGATGGGAAGTTAT
ACGATGCCTACGTGTCCTATAGCGACTGCCCAGAGGACCGCAAATTTGTAAATTTTATTCTGAAGCCTCA
GTTGGAGCGGCGTCGGGGATACAAACTCTTCCTAGAGGACCGCGACCTCTTGCCTCGCGCGGAGCCCTCT
GCCGACCTTTTGGTGAACCTGAGTCGCTGTCGGCGTCTCATCGTGGTTCTTTCAGATGCCTTCCTAAGCC
GGCCCTGGTGTAGCCAGAGCTTCCGGGAGGGACTGTGCCGCCTACTGGAGCTCACCCGCAGACCTATCTT
CATCACCTTTGAGGGCCAGAGGCGTGAGCCCATACACCCTGCTCTCCGGCTCCTGCGCCAGCACCGCCAC
CTCGTGACCCTGGTGCTTTGGAAGCCTGGCTCCGTGACTCCTTCCTCTGATTTTTGGAAAGAGCTACAGC
TAGCACTGCCACGGAAGGTGCAGTACAGGCCGGTGGAGGGAGACCCTCAAACCCGACTTCAGGATGACAA
AGATCCCATGCTAATCGTGAGAGGACGTGCTGCCCAGGGCCGGGGCATGGAGTCAGAGCTGGATCCAGAC
CCTGAGGGAGACCTGGGTGTCCGTGGACCTGTCTTTGGGGAGCCACCAACTCCACTGCAGGAAACCAGGA
TCTGCATAGGAGAGAGCCACGGCAGTGAAATGGATGTCTCTGACCTCGGCTCTCGAAACTACAGTGCACG
GACAGACTTCTACTGCCTCGTGTCTGAGGATGATGTGTAG

Translation (409 aa):
MAGVCDMAPNFLSPSEDQALGLALGREVALNCTAWVFSRPQCPQPSVQWLKDGLALGNGSHFSLHEDFWV
SANFSEIVSSVLVLNLTNAEDYGTFTCSVWNVSSHSFTLWRAGPAGHVAAVLASLLVLVVLLLVALLYVK
CRLNMLLWYQDTYGEVEMNDGKLYDAYVSYSDCPEDRKFVNFILKPQLERRRGYKLFLEDRDLLPRAEPS
ADLLVNLSRCRRLIVVLSDAFLSRPWCSQSFREGLCRLLELTRRPIFITFEGQRREPIHPALRLLRQHRH
LVTLVLWKPGSVTPSSDFWKELQLALPRKVQYRPVEGDPQTRLQDDKDPMLIVRGRAAQGRGMESELDPD
PEGDLGVRGPVFGEPPTPLQETRICIGESHGSEMDVSDLGSRNYSARTDFYCLVSEDDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH