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Report for CCDS40049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40049.1 Public Mus musculus 7 Rrm1 23 108 98 CCDS HistoryNCBI Gene:20133Re-query CCDS DB by CCDS ID:40049.1Re-query CCDS DB by GeneID:20133See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033283.9 ENSMUSP00000033283.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033283.9Link to Ensembl Protein Viewer:ENSMUSP00000033283.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000033283Re-query CCDS DB by Protein ID:ENSMUSP00000033283
Original member Current member NCBI NM_009103.3 NP_033129.2 Accepted alive Link to Nucleotide Sequence:NM_009103.3Link to Protein Sequence:NP_033129.2Re-query CCDS DB by Nucleotide ID:NM_009103Re-query CCDS DB by Protein ID:NP_033129Link to BLAST:NP_033129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033129.2 792 P07742 792 100% 0 0

Chromosomal Locations for CCDS 40049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102442025 102442043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102442987 102443075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102446550 102446727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102447801 102447901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102449195 102449254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102450036 102450075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102450901 102451063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102454496 102454637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102456471 102456554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102457152 102457313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102457560 102457639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102459389 102459590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102460291 102460440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102460630 102460851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102461607 102461683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102463646 102463781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102465718 102465813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102466878 102467066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102468295 102468483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGCATGTGATCAAGCGAGATGGCCGCCAAGAGCGAGTTATGTTTGACAAAATTACATCACGAATCCAGA
AACTCTGTTATGGACTCAACATGGACTTTGTTGATCCTGCTCAGATCACCATGAAAGTAATCCAAGGCCT
ATATAGTGGGGTCACCACAGTGGAACTGGACACCCTGGCTGCTGAGACAGCCGCGACCTTGACCACGAAG
CACCCTGACTATGCCATCCTGGCAGCAAGGATAGCCGTCTCTAACTTGCACAAAGAAACAAAGAAAGTGT
TCAGTGATGTGATGGAGGATCTCTACAACTACATAAATCCGCACAACGGCAGACACTCTCCCATGGTGGC
CAGCTCAACACTCGACATTGTTATGGCCAATAAGGATCGCCTGAATTCTGCCATTATCTATGACCGAGAT
TTCTCTTATAACTACTTTGGCTTTAAGACACTGGAACGGTCATATTTGTTGAAGATCAATGGTAAAGTGG
CTGAAAGACCACAGCATATGTTGATGAGGGTTTCTGTGGGGATTCACAAAGAAGATATTGATGCTGCAAT
TGAAACCTACAACCTACTTTCTGAGAAGTGGTTCACTCATGCCTCTCCTACTCTCTTCAATGCTGGGACC
AACCGCCCACAGCTGTCTAGCTGTTTCCTCTTGAGTATGAAAGATGACAGCATTGAAGGAATTTATGATA
CTCTGAAGCAGTGTGCCTTGATTTCTAAGTCCGCTGGGGGAATTGGTGTTGCTGTGAGTTGTATTCGGGC
CACTGGTAGCTACATCGCTGGGACTAATGGCAATTCTAATGGCCTTGTGCCAATGCTGAGAGTATATAAC
AACACAGCTCGCTATGTGGATCAAGGTGGAAACAAGCGCCCAGGCGCGTTTGCTATTTACCTGGAGCCTT
GGCACTTAGACATCTTTGAGTTCCTTGACTTGAAGAAGAACACAGGCAAGGAAGAACAGCGAGCACGCGA
TCTCTTCTTTGCACTTTGGATCCCAGATCTCTTCATGAAGCGAGTGGAGACTAACCAGGACTGGTCATTG
ATGTGTCCCAATGAGTGTCCTGGTCTGGACGAGGTCTGGGGAGAGGAGTTTGAGAAGTTATATGAAAGTT
ACGAGAAGCAGGGTCGTGTCCGAAAAGTTGTAAAAGCTCAGCAGCTTTGGTATGCCATCATTGAGTCCCA
GACGGAGACCGGTACCCCATACATGCTCTACAAAGATTCCTGTAACCGGAAGAGCAACCAGCAGAACCTG
GGAACCATCAAATGCAGCAACCTGTGTACAGAAATAGTAGAGTACACCAGTAAAGATGAGGTTGCAGTTT
GTAACTTGGCTTCTCTGGCTCTGAATATGTATGTCACACCGGAACATACGTATGACTTTGAGAAACTGGC
AGAAGTCACTAAAGTCATTGTCCGAAATCTGAATAAAATAATTGATATAAACTACTACCCTATTCCAGAG
GCACACTTATCAAATAAACGCCATCGGCCCATTGGAATTGGGGTACAAGGTTTAGCAGATGCTTTCATCC
TGATGAGATACCCCTTTGAGAGCCCAGAAGCCCAGTTATTAAATAAGCAGATCTTTGAAACCATTTACTA
TGGAGCCCTGGAAGCCAGCTGTGAACTAGCCAAGGAGTATGGCCCCTATGAAACGTATGAGGGATCTCCA
GTCAGCAAGGGTATTCTTCAGTATGACATGTGGAATGTTGCTCCTACAGACCTGTGGGACTGGAAGCCTC
TCAAGGAGAAGATTGCAAAGTATGGTATAAGGAACAGTTTACTTATTGCCCCAATGCCTACTGCTTCAAC
TGCCCAGATTCTGGGGAATAATGAGTCCATTGAGCCTTATACCAGTAACATCTACACTCGAAGAGTCTTG
TCAGGGGAATTTCAGATTGTGAATCCTCACTTACTGAAAGATCTTACTGAGCGGGGCTTGTGGAATGAAG
AGATGAAAAATCAGATTATTGCATGCAATGGCTCCATTCAGAGCATACCAGAAATTCCTGATGACCTGAA
GCAACTCTATAAGACCGTGTGGGAAATCTCTCAGAAGACTGTTCTCAAGATGGCAGCCGAGAGAGGTGCT
TTCATCGATCAGAGCCAGTCTTTAAACATCCATATTGCTGAGCCCAACTACGGCAAACTCACTAGTATGC
ACTTCTACGGTTGGAAGCAGGGTTTAAAGACTGGAATGTATTACTTAAGGACGAGGCCTGCCGCTAATCC
AATCCAGTTCACTCTGAACAAGGAAAAACTGAAAGATAAGGAAAAGGCACTGAAGGAGGAGGAGGAGAAG
GAGAGGAACACAGCAGCCATGGTGTGCTCTTTGGAGAACAGAGAGGAGTGCCTGATGTGTGGATCCTGA

Translation (792 aa):
MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTK
HPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRD
FSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLFNAGT
NRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYN
NTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSL
MCPNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL
GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKIIDINYYPIPE
AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSP
VSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVL
SGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA
FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEEK
ERNTAAMVCSLENREECLMCGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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