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Report for CCDS39578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39578.1 Public Mus musculus 6 Foxp1 23 108 98 CCDS HistoryNCBI Gene:108655Re-query CCDS DB by CCDS ID:39578.1Re-query CCDS DB by GeneID:108655See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074346.11 ENSMUSP00000073953.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074346.11Link to Ensembl Protein Viewer:ENSMUSP00000073953.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074346Re-query CCDS DB by Protein ID:ENSMUSP00000073953
Original member Current member EBI ENSMUST00000113322.8 ENSMUSP00000108948.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113322.8Link to Ensembl Protein Viewer:ENSMUSP00000108948.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113322Re-query CCDS DB by Protein ID:ENSMUSP00000108948
Original member Current member NCBI NM_053202.2 NP_444432.1 Accepted alive Link to Nucleotide Sequence:NM_053202.2Link to Protein Sequence:NP_444432.1Re-query CCDS DB by Nucleotide ID:NM_053202Re-query CCDS DB by Protein ID:NP_444432Link to BLAST:NP_444432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444432.1 705 P58462-1 705 100% 0 0

Chromosomal Locations for CCDS 39578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 98930090 98930234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98935274 98935440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98939719 98939788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98941536 98941657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98944619 98944720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98945347 98945426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98945534 98945735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98954321 98954404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98966027 98966114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98978133 98978237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99003200 99003404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99009904 99010054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99015424 99015510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99016528 99016665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99075854 99076045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99162839 99163018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2118 nt):
ATGATGCAAGAATCTGGGTCTGAGACAAAAAGTAACGGATCAGCCATCCAGAACGGGTCCAGCGGTGGCA
ACCACTTACTAGAGTGCGGGGCACTTCGTGACACTCGGTCCAACGGAGAGGCACCAGCGGTGGACCTGGG
GGCAGCCGACCTTGCCCACGTCCAGCAGCAGCAACAGCAGGCCCTGCAGGTGGCAAGGCAGCTCCTCCTT
CAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGC
AACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAAGTTAGTGGATTAAAGTCTCCCAAGAGGAA
TGACAAGCAACCAGCTCTTCAGGTTCCCGTGTCAGTGGCTATGATGACACCTCAGGTTATCACTCCTCAA
CAAATGCAGCAGATCCTCCAGCAGCAGGTGCTGAGCCCCCAGCAGCTCCAGGTTCTCCTCCAGCAGCAGC
AGGCCCTCATGCTTCAACAGCAGCTTCAAGAATTTTATAAAAAACAACAGGAACAGTTGCAGCTTCAACT
TCTCCAACAGCAACATGCTGGAAAACAGCCGAAAGAGCAGCAGGTGGCTACCCAGCAGTTGGCTTTCCAG
CAGCAGCTTCTCCAGATGCAGCAGCTGCAGCAGCAGCACCTCTTGTCTCTCCAGCGCCAAGGCCTCCTAA
CAATTCAGCCGGGGCAGCCTGCCCTTCCCCTCCAACCCCTCGCTCAAGGCATGATTCCAACGGAACTGCA
GCAGCTCTGGAAAGAAGTGACAAGTGCCCACACTGCAGAGGAAACCACAAGCAGCAACCACAGCAGCCTA
GACCTGACCAGCACATGTGTCTCGTCCTCGGCACCTTCCAAGTCCTCCCTAATCATGAACCCGCATGCCT
CTACCAATGGACAGCTCTCGGTCCACACTCCCAAAAGGGAAAGCTTGTCCCACGAGGAGCACCCCCACAG
CCACCCTCTCTATGGACATGGCGTATGCAAGTGGCCAGGCTGTGAGGCGGTTTGTGACGACTTCCCAGCC
TTTCTAAAACATCTCAACAGTGAGCATGCGCTGGACGATAGAAGCACAGCTCAATGTAGAGTACAAATGC
AGGTTGTACAGCAGTTAGAGCTACAGCTTGCAAAAGACAAAGAGCGCCTGCAAGCCATGATGACCCACCT
GCATGTGAAGTCTACAGAACCCAAAGCTGCCCCTCAGCCCCTGAATCTGGTATCAAGTGTCACCCTCTCC
AAGTCTGCCTCAGAGGCTTCTCCACAGAGCTTACCTCATACTCCAACAACCCCCACCGCCCCCCTGACTC
CTGTCACCCAAGGCCCCTCCGTCATCACCACCACCAGCATGCACACGGTGGGACCTATCCGCAGGCGGTA
CTCAGACAAATACAACGTGCCCATTTCTTCAGCAGATATTGCGCAGAACCAAGAATTTTATAAGAACGCG
GAAGTTAGACCACCATTTACATATGCATCTTTAATCAGGCAGGCCATTCTCGAATCTCCAGAAAAGCAGC
TAACACTAAACGAAATCTATAACTGGTTCACACGAATGTTTGCTTACTTCCGACGCAATGCAGCCACGTG
GAAGAATGCAGTGCGTCATAATCTTAGTCTCCACAAGTGTTTTGTGCGAGTAGAGAACGTTAAAGGGGCA
GTATGGACAGTGGATGAAGTAGAGTTCCAAAAACGGAGGCCACAAAAGATCAGTGGTAACCCTTCCCTTA
TTAAAAACATGCAGAGCAGCCACGCCTACTGCACACCTCTCAATGCAGCTTTACAGGCTTCCATGGCTGA
GAATAGTATACCTCTGTACACTACCGCTTCCATGGGAAATCCCACTCTGGGCAGCCTGGCCAGTGCCATC
CGGGAGGAGCTGAACGGGGCCATGGAGCACACCAACAGCAACGAGAGTGACAGCAGTCCAGGCAGATCCC
CTATGCAAGCTGTGCACCCCATACACGTCAAAGAAGAACCCCTCGACCCCGAGGAAGCTGAAGGCCCTCT
GTCCTTAGTGACAACAGCCAACCACAGTCCAGATTTTGACCATGACAGAGATTACGAAGACGAACCAGTA
AATGAGGACATGGAGTGA

Translation (705 aa):
MMQESGSETKSNGSAIQNGSSGGNHLLECGALRDTRSNGEAPAVDLGAADLAHVQQQQQQALQVARQLLL
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVSGLKSPKRNDKQPALQVPVSVAMMTPQVITPQ
QMQQILQQQVLSPQQLQVLLQQQQALMLQQQLQEFYKKQQEQLQLQLLQQQHAGKQPKEQQVATQQLAFQ
QQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQGMIPTELQQLWKEVTSAHTAEETTSSNHSSL
DLTSTCVSSSAPSKSSLIMNPHASTNGQLSVHTPKRESLSHEEHPHSHPLYGHGVCKWPGCEAVCDDFPA
FLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDKERLQAMMTHLHVKSTEPKAAPQPLNLVSSVTLS
KSASEASPQSLPHTPTTPTAPLTPVTQGPSVITTTSMHTVGPIRRRYSDKYNVPISSADIAQNQEFYKNA
EVRPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGA
VWTVDEVEFQKRRPQKISGNPSLIKNMQSSHAYCTPLNAALQASMAENSIPLYTTASMGNPTLGSLASAI
REELNGAMEHTNSNESDSSPGRSPMQAVHPIHVKEEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPV
NEDME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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