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Report for CCDS39543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39543.1 Public Mus musculus 6 Anxa4 23 108 98 CCDS HistoryNCBI Gene:11746Re-query CCDS DB by CCDS ID:39543.1Re-query CCDS DB by GeneID:11746See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001187.14 ENSMUSP00000001187.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001187.14Link to Ensembl Protein Viewer:ENSMUSP00000001187.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001187Re-query CCDS DB by Protein ID:ENSMUSP00000001187
Original member Current member EBI ENSMUST00000113675.7 ENSMUSP00000109305.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113675.7Link to Ensembl Protein Viewer:ENSMUSP00000109305.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113675Re-query CCDS DB by Protein ID:ENSMUSP00000109305
Original member Current member NCBI NM_001331120.1 NP_001318049.1 Accepted alive Link to Nucleotide Sequence:NM_001331120.1Link to Protein Sequence:NP_001318049.1Re-query CCDS DB by Nucleotide ID:NM_001331120Re-query CCDS DB by Protein ID:NP_001318049Link to BLAST:NP_001318049.1
Original member NCBI NM_013471.2 NP_038499.2 Updated not alive Link to Nucleotide Sequence:NM_013471.2Link to Protein Sequence:NP_038499.2Re-query CCDS DB by Nucleotide ID:NM_013471Re-query CCDS DB by Protein ID:NP_038499
Current member NCBI NM_013471.3 NP_038499.2 Accepted alive Link to Nucleotide Sequence:NM_013471.3Link to Protein Sequence:NP_038499.2Re-query CCDS DB by Nucleotide ID:NM_013471Re-query CCDS DB by Protein ID:NP_038499Link to BLAST:NP_038499.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001318049.1 319 P97429 319 100% 0 0
NP_038499.2 319 P97429 319 100% 0 0

Chromosomal Locations for CCDS 39543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86737764 86737823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86741836 86741958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86743118 86743176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86744625 86744720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86748887 86748980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86751063 86751119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86752153 86752232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86753803 86753893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86754853 86754966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86757819 86757913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86760674 86760761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86765762 86765764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGAAGCCAAAGGAGGAACCGTGAAAGCTGCTTCAGGATTCAACGCAACTGAAGATGCCCAGACCCTGA
GG
AAGGCCATGAAAGGCCTCGGTACTGATGAAGATGCCATTATCGGAATCTTAGCCTACAGAAACACCGC
C
CAGCGCCAGGAGATCAGGAGTGCCTACAAGAGCACCATTGGCAGGGACCTGATTGAGGACTTGAAGTCG
GAG
CTGAGCAGCAACTTTGAGCAGGTGATCCTGGGGCTGATGACACCCACAGTGCTGTATGACGTACAGG
AG
CTGCGGAGGGCCATGAAGGGAGCTGGCACGGACGAGGGCTGTCTGATTGAGATCCTGGCCTCTCGTAC
C
CCTGAGGAGATCCGTCGAATCAACCAGACATACCAGCAGCAATATGGAAGGAGCCTTGAAGAGGACATC
TGC
TCTGACACATCCTTCATGTTCCAGCGAGTACTGGTGTCCCTGTCGGCGGCTGGCAGGGATGAAGGAA
AT
TACCTTGATGATGCTCTTATGAAGCAGGACGCCCAGGAACTGTATGAGGCTGGAGAGAAGAGATGGGG
G
ACAGACGAGGTGAAATTCCTAAGCATTCTCTGTTCCCGGAACCGGAACCATCTGCTCCACGTGTTTGAT
GAA
TACAAAAGAATCTCACAGAAGGACATTGAACAGAGCATTAAGTCTGAGACATCTGGAAGCTTTGAAG
AT
GCCCTGTTGGCTATAGTGAAGTGCATGCGGAGTAAACCTTCATATTTCGCTGAGAGACTTTATAAATC
C
ATGAAGGGCTTAGGCACTGATGACAACACCCTCATCAGAGTGATGGTCTCAAGAGCAGAGATTGACATG
CTG
GACATCCGGGCGAGCTTCAAGAGGCTCTACGGGAAGTCTTTGTACTCTTTCATCAAGGGTGACACTT
CC
GGAGACTACAGGAAGGTTCTGCTCGTTCTCTGTGGAGGAGATGATTAA


Translation (319 aa):
MEAKGGTVKAASGFNATEDAQTLRKAMKGLGTDEDAIIGILAYRNTAQRQEIRSAYKSTIGRDLIEDLKS
E
LSSNFEQVILGLMTPTVLYDVQELRRAMK
GAGTDEGCLIEILASRTPEEIRRINQTYQQQYGRSLEEDI
C
SDTSFMFQRVLVSLSA
AGRDEGNYLDDALMKQDAQELYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFD
E
YKRISQKDIEQSIKSETSGSFEDALLAI
VKCMRSKPSYFAERLYKSMKGLGTDDNTLIRVMVSRAEIDM
L
DIRASFKRLYGKSLYSFIK
GDTSGDYRKVLLVLCGGDD



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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