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Report for CCDS39474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39474.1 Public Mus musculus 6 Tpk1 23 108 98 CCDS HistoryNCBI Gene:29807Re-query CCDS DB by CCDS ID:39474.1Re-query CCDS DB by GeneID:29807See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067888.13 ENSMUSP00000065631.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067888.13Link to Ensembl Protein Viewer:ENSMUSP00000065631.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067888Re-query CCDS DB by Protein ID:ENSMUSP00000065631
Original member Current member NCBI NM_013861.4 NP_038889.1 Accepted alive Link to Nucleotide Sequence:NM_013861.4Link to Protein Sequence:NP_038889.1Re-query CCDS DB by Nucleotide ID:NM_013861Re-query CCDS DB by Protein ID:NP_038889Link to BLAST:NP_038889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038889.1 243 Q9R0M5-1 243 100% 0 0

Chromosomal Locations for CCDS 39474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43346782 43346900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43423621 43423732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43469002 43469148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43488875 43488970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43523884 43523956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43559943 43560012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43611314 43611385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43665760 43665802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGAGCATGCCTTTACCCCGTTGGAACCCCTGCTACCTACGGGGAACTTGAAATACTGCCTTGTGGTTC
TTAATCAGCCTTTGGATGCACGATTTCGCCATCTTTGGAAAAAAGCTCTCTTAAGAGCCTGTGCTGATGG
GGGTGCCAACCACTTATATGATCTCACTGAAGGAGAGAGAGAAAGCTTCTTGCCTGAATTCGTCAGTGGG
GACTTTGATTCTATTAGGCCTGAAGTCAAAGAGTACTACACCAAGAAGGGCTGTGATCTTATTTCAACTC
CTGACCAAGACCACACTGACTTTACCAAGTGTCTTCAAGTGCTCCAAAGGAAGATAGAGGAAAAGGAACT
GCAGGTTGACGTGATTGTGACACTGGGAGGTCTCGGTGGGCGTTTTGACCAAATCATGGCCTCTGTGAAT
ACCCTTTTCCAAGCCACTCACATCACTCCTGTGCCGATTATAATAATCCAAAAGGACTCTCTCATCTACC
TCCTCCAACCCGGGAAGCACAGGCTCCATGTAGACACTGGAATGGAAGGGAGCTGGTGTGGCCTGATTCC
TGTTGGACAGCCTTGCAACCAGGTGACGACAACAGGCCTGAAATGGAACCTCACAAATGATGTTCTTGGC
TTTGGAACACTGGTCAGTACTTCTAACACCTACGATGGGTCCGGCCTTGTCACTGTGGAAACTGACCACC
CACTCCTCTGGACCATGGCCATCAAGAGCTAA

Translation (243 aa):
MEHAFTPLEPLLPTGNLKYCLVVLNQPLDARFRHLWKKALLRACADGGANHLYDLTEGERESFLPEFVSG
DFDSIRPEVKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVN
TLFQATHITPVPIIIIQKDSLIYLLQPGKHRLHVDTGMEGSWCGLIPVGQPCNQVTTTGLKWNLTNDVLG
FGTLVSTSNTYDGSGLVTVETDHPLLWTMAIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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