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Report for CCDS39179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39179.1 Public Mus musculus 5 Rasgef1b 23 108 98 CCDS HistoryNCBI Gene:320292Re-query CCDS DB by CCDS ID:39179.1Re-query CCDS DB by GeneID:320292See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031276.14 ENSMUSP00000031276.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031276.14Link to Ensembl Protein Viewer:ENSMUSP00000031276.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031276Re-query CCDS DB by Protein ID:ENSMUSP00000031276
Original member Current member NCBI NM_145839.2 NP_665838.1 Accepted alive Link to Nucleotide Sequence:NM_145839.2Link to Protein Sequence:NP_665838.1Re-query CCDS DB by Nucleotide ID:NM_145839Re-query CCDS DB by Protein ID:NP_665838Link to BLAST:NP_665838.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665838.1 473 Q8JZL7-1 473 100% 0 0

Chromosomal Locations for CCDS 39179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 99218774 99218798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99221361 99221433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99222318 99222441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99222940 99223035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99227988 99228083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99229321 99229400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99232091 99232193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99232302 99232397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99233915 99233989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99234476 99234691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99240823 99240960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99241409 99241531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99243064 99243240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGCCTCAGACGCCCCCCTTCTCAGCAATGTTTGACAGCAGTGGCTACAACCGAAACCTCTACCAGTCCG
CAGAGGACAGCTGTGGAGGCTTGTACTACCATGACAACAACCTCCTTTCTGGGTCTCTGGAAGCCCTTAT
CCAACACTTGGTACCCAATGTGGATTACTATCCTGATAGGACATACATCTTCACCTTCCTGCTTAGTTCT
CGGTTATTCATGCATCCGTACGAGCTCATGGCTAAGGTTTGCCACCTGTGTGTTGAGCACCAGCGACTGA
GTGAAGGGGACGGCGATAAGAACCAGATGAGAAAAATTGCACCTAAAATCCTTCAGCTCTTGACAGAGTG
GACAGAAACATTTCCGTATGACTTCCGGGACGAGAGAATGATGAGGAACCTCAAGGACCTGGCGCACAGG
ATGGCCAGTGGCGAGGAGCAGACGTACCGGAAGAACGTCCAGCAGATGATGCAGTGTCTGATCCGAAAAC
TCGCCGCCCTCAGCCAGTATGAGGAAGTCCTGGCCAAACTCAGCTCCACAGCCACGGACCGGCTCACGGT
TCTGAAGACCAAGCCCCAGTCCATACAGCGGGACATCATGACCGTCTGCAGCGACCCTTACACATTGGCC
CAGCAGCTGACCCACATCGAGCTGGAGAGACTCAATTACATTGGCCCAGAAGAGTTTGTTCAGGCATTTG
TGCAGAAGGATCCTTTGGACAACGATAAGAGTTGCTACAGCGAACGGAAGAAAACACGGAACTTGGAGGC
GTACGTAGAATGGTTTAATCGTCTAAGCTACTTGGTTGCTACAGAAATCTGCATGCCTGTGAAGAAGAAG
CACCGAGCGAGGATGATCGAGTATTTCATCGATGTGGCTCGAGAGTGTTTCAACATTGGAAACTTCAATT
CTTTGATGGCAATCATCTCTGGTATGAATATGAGCCCGGTCTCGAGACTTAAGAAAACCTGGGCCAAAGT
GAAGACTGCAAAGTTTGACATTCTTGAGCATCAGATGGATCCATCCAGCAATTTCTACAACTACAGAACG
GCTCTCCGAGGGGCAGCGCAAAGGTCCCTGACTGCTCACAGTAGCAGAGAGAAGATTGTGATACCATTCT
TCAGTCTCTTAATCAAAGACATTTATTTCCTCAACGAGGGCTGTGTCAACCGTCTTCCAAATGGCCATGT
CAACTTTGAGAAATTTTGGGAACTGGCCAAACAAGTGAGTGAATTTATGACATGGAAACAGGTGGAGTGT
CCGTTCGAGCGGGACCGGAAGGTCTTACAATACCTGCTCTCCGTGCCTGTATTCAGTGAAGATGCGCTCT
ACTTGGCTTCATACGAGAGTGAAGGACCCGAAAATAATATAGAGAAGGACAGATGGAAGTCTTTAAGGTC
CAGCCTTTTGGGCAGAGTTTAA

Translation (473 aa):
MPQTPPFSAMFDSSGYNRNLYQSAEDSCGGLYYHDNNLLSGSLEALIQHLVPNVDYYPDRTYIFTFLLSS
RLFMHPYELMAKVCHLCVEHQRLSEGDGDKNQMRKIAPKILQLLTEWTETFPYDFRDERMMRNLKDLAHR
MASGEEQTYRKNVQQMMQCLIRKLAALSQYEEVLAKLSSTATDRLTVLKTKPQSIQRDIMTVCSDPYTLA
QQLTHIELERLNYIGPEEFVQAFVQKDPLDNDKSCYSERKKTRNLEAYVEWFNRLSYLVATEICMPVKKK
HRARMIEYFIDVARECFNIGNFNSLMAIISGMNMSPVSRLKKTWAKVKTAKFDILEHQMDPSSNFYNYRT
ALRGAAQRSLTAHSSREKIVIPFFSLLIKDIYFLNEGCVNRLPNGHVNFEKFWELAKQVSEFMTWKQVEC
PFERDRKVLQYLLSVPVFSEDALYLASYESEGPENNIEKDRWKSLRSSLLGRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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