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Report for CCDS38905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38905.1 Public Mus musculus 4 Kdf1 23 108 98 CCDS HistoryNCBI Gene:69073Re-query CCDS DB by CCDS ID:38905.1Re-query CCDS DB by GeneID:69073See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042919.15 ENSMUSP00000048768.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042919.15Link to Ensembl Protein Viewer:ENSMUSP00000048768.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042919Re-query CCDS DB by Protein ID:ENSMUSP00000048768
Original member Current member EBI ENSMUST00000105901.1 ENSMUSP00000101521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105901.1Link to Ensembl Protein Viewer:ENSMUSP00000101521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105901Re-query CCDS DB by Protein ID:ENSMUSP00000101521
Original member Current member NCBI NM_001083916.1 NP_001077385.1 Accepted alive Link to Nucleotide Sequence:NM_001083916.1Link to Protein Sequence:NP_001077385.1Re-query CCDS DB by Nucleotide ID:NM_001083916Re-query CCDS DB by Protein ID:NP_001077385Link to BLAST:NP_001077385.1
Original member Current member NCBI NM_133707.2 NP_598468.2 Accepted alive Link to Nucleotide Sequence:NM_133707.2Link to Protein Sequence:NP_598468.2Re-query CCDS DB by Nucleotide ID:NM_133707Re-query CCDS DB by Protein ID:NP_598468Link to BLAST:NP_598468.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077385.1 397 A2A9F4 397 100% 0 0
NP_598468.2 397 A2A9F4 397 100% 0 0

Chromosomal Locations for CCDS 38905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133527974 133529009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133529831 133529905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133530287 133530369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGCCCAGGCCGGGACAGCCCCGCCCATCATCTGGGCCTCCACGCTTGGGGCCCTGGGAGAGGCCATCAG
AGTTATGCCTGGAAACGAACGATGAGCGCTCCCAGCCCCCACCGGGCCGTCGCACCAGGAGGCCAGACCC
TAAGGACCCTGGCCACCACGGGCCAGAGAGTATCACCTTCATTTCAGGCTCTGCAGAACCAGCCAACGAG
CCCCCAACCTGCTGCCTCCTCTGGCGCCCCTGGGGTTGGGACTGGTGTAGGGCTGCCTTCTGCTTCCGAC
GCTGCAGGGATTGCCTGCAGCGCTGTGGGGCTTGTGTGCGGGGCTGCAGCCCCTGCTTGTCTGCCGGAGA
CCCCATTGAAGGGTCTGCCGAAGCCGCCTGGGCCAAGGAACACAATGGTGTGCCCCCCAGCCCAGACCGT
GCACCCCCCAGCCGCCGGGATGGCCAGAGGCTCAAGACAAGCATGGGCAGCAGCTTCAGCTACCCTGATG
TTAAGCTCAAAGGCATCCCTGTCTACCCCTACCGCCATGCCACCTCCCCAGTCCCTGACGTGGACTCCTG
CTGCAAGGAGCCCCTGGCCGAGCCTCCTCCCACGCGGCACAGCTTGCCTAGCACCTTCACCAACAGCCCC
CGCGGCTCTGAGGAGTACTACTCCTTCCATGAATCGGACCTGGACCTGCCTGAGATGGGCAGTGGCTCCA
TGTCGAGCCGGGAGATCGACGTGCTTATTTTCAAGAAGCTGACAGAGCTGTTCAGCGTGCACCAGATTGA
CGAGCTGGCCAAGTGCACATCGGACACCGTGTTCCTGGAGAAGACCAGCAAGATCTCAGACCTGATCAGC
AGCATCACGCAGGACTACCACCTGGATGAGCAAGACGCCGAGGGCCGCCTGGTGCGGGGCATCATCCGTA
TTAGTACCCGCAAAAGCCGCTCCCGCCCACAGACCTCCGAGGGGCGCTCAGCCCGCTCTACTGCCCCTGC
TGCTGCCCCCGACAGTGGCCATGAGACCATGCTGGGCTCTGGCCTCAGCCAGGACGAGCTGACAGTCCAG
ATCTCCCAGGAGACAACCGCAGATGCCATCGCCAGGAAACTGAGGCCGTATGGAGCCCCAGGGTACCCAG
CCAGCCAAGACTCATCATTCCAGGGCACGGACACAGACTCTTCAGGGGCACCCCTGCTGCAGGTGTACTG
CTAA

Translation (397 aa):
MPRPGQPRPSSGPPRLGPWERPSELCLETNDERSQPPPGRRTRRPDPKDPGHHGPESITFISGSAEPANE
PPTCCLLWRPWGWDWCRAAFCFRRCRDCLQRCGACVRGCSPCLSAGDPIEGSAEAAWAKEHNGVPPSPDR
APPSRRDGQRLKTSMGSSFSYPDVKLKGIPVYPYRHATSPVPDVDSCCKEPLAEPPPTRHSLPSTFTNSP
RGSEEYYSFHESDLDLPEMGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLIS
SITQDYHLDEQDAEGRLVRGIIRISTRKSRSRPQTSEGRSARSTAPAAAPDSGHETMLGSGLSQDELTVQ
ISQETTADAIARKLRPYGAPGYPASQDSSFQGTDTDSSGAPLLQVYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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