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Report for CCDS38748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38748.1 Public Mus musculus 4 Clta 23 108 98 CCDS HistoryNCBI Gene:12757Re-query CCDS DB by CCDS ID:38748.1Re-query CCDS DB by GeneID:12757See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107846.9 ENSMUSP00000103478.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107846.9Link to Ensembl Protein Viewer:ENSMUSP00000103478.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107846Re-query CCDS DB by Protein ID:ENSMUSP00000103478
Original member Current member EBI ENSMUST00000170241.7 ENSMUSP00000127344.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170241.7Link to Ensembl Protein Viewer:ENSMUSP00000127344.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170241Re-query CCDS DB by Protein ID:ENSMUSP00000127344
Original member Current member NCBI NM_001080384.3 NP_001073853.1 Accepted alive Link to Nucleotide Sequence:NM_001080384.3Link to Protein Sequence:NP_001073853.1Re-query CCDS DB by Nucleotide ID:NM_001080384Re-query CCDS DB by Protein ID:NP_001073853Link to BLAST:NP_001073853.1

Chromosomal Locations for CCDS 38748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 44012792 44013008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44018813 44018850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44019874 44019991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44025449 44025560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44032401 44032572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGCCGAGTTGGATCCATTCGGCGCTCCCGCCGGTGCGCCCGGTGGCCCCGCTCTAGGAAACGGGGTGG
CGGGCGCCGGCGAAGAAGACCCGGCCGCGGCCTTCTTGGCGCAGCAAGAGAGTGAGATTGCGGGCATCGA
GAACGATGAGGCCTTCGCCATCCTGGACGGCGGCGCCCCCGGGCCGCAGCCACACGGCGAGCCGCCGGGA
GGTCCGGATGCTGTTGACGGAGTGATGAATGGTGAATACTACCAGGAGAGCAATGGTCCAACAGACAGTT
ACGCAGCCATTTCAGAAGTGGATCGATTGCAGTCAGAGCCTGAAAGTATCCGTAAGTGGAGAGAAGAGCA
GACAGAGCGCCTGGAAGCCCTCGATGCCAATTCTCGGAAGCAAGAAGCGGAGTGGAAAGAAAAGGCGATA
AAGGAGCTGGAAGAGTGGTATGCGAGGCAGGACGAGCAGCTACAGAAGACAAAGGCAAACAACAGGGCAG
CAGAAGAAGCCTTTGTAAACGACATTGACGAGTCATCCCCAGGCACTGAGTGGGAGCGGGTGGCCCGCCT
GTGTGACTTTAACCCCAAGTCCAGCAAACAGGCCAAAGATGTCTCTCGCATGCGCTCAGTCCTCATCTCC
CTGAAGCAGGCCCCCCTGGTGCACTGA

Translation (218 aa):
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPG
GPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI
KELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
LKQAPLVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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