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Report for CCDS38482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38482.1 Public Mus musculus 3 Lmna 16 104 75 CCDS HistoryNCBI Gene:16905Re-query CCDS DB by CCDS ID:38482.1Re-query CCDS DB by GeneID:16905

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Sequence IDs included in CCDS 38482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000029699 ENSMUSP00000029699 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029699Link to Ensembl Protein Viewer:ENSMUSP00000029699Re-query CCDS DB by Nucleotide ID:ENSMUST00000029699Re-query CCDS DB by Protein ID:ENSMUSP00000029699
Original member Current member EBI,WTSI OTTMUST00000075092 OTTMUSP00000039297 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000075092Link to Vega Protein Viewer:OTTMUSP00000039297Re-query CCDS DB by Nucleotide ID:OTTMUST00000075092Re-query CCDS DB by Protein ID:OTTMUSP00000039297
Original member Current member NCBI NM_001002011.3 NP_001002011.2 Accepted alive Link to Nucleotide Sequence:NM_001002011.3Link to Protein Sequence:NP_001002011.2Re-query CCDS DB by Nucleotide ID:NM_001002011Re-query CCDS DB by Protein ID:NP_001002011Link to BLink:NP_001002011.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002011.2 665 P48678-1 665 100% 0 0

Chromosomal Locations for CCDS 38482.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 3Link to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3

Chromosome Start Stop Links
3 88482074 88482100 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88482346 88482612 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88483318 88483413 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88483827 88483946 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88484047 88484154 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88484615 88484837 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88484927 88485147 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88486204 88486329 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88486460 88486630 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88486808 88486933 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88488275 88488431 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3
3 88502748 88503103 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGAGACCCCGTCACAGCGGCGCGCCACCCGCAGTGGGGCGCAGGCCAGCTCTACCCCACTGTCGCCCA
CT
CGGATCACCCGGCTGCAGGAGAAGGAGGACCTGCAGGAGCTCAATGACCGCCTGGCCGTGTACATCGA
T
CGCGTGCGTTCCCTGGAGACCGAGAACGCGGGGCTGCGCCTTCGCATCACTGAGTCTGAAGAGGTGGTC
AGC
CGAGAGGTGTCCGGCATCAAGGCGGCCTACGAGGCCGAGCTGGGGGATGCCCGCAAGACCCTTGATT
CT
GTGGCCAAGGAGCGCGCCCGCCTCCAGCTAGAGCTGAGCAAAGTGCGTGAGGAGTTCAAGGAGCTGAA
G
GCTCGCAACACCAAGAAGGAGGGGGACTTGTTGGCTGCGCAGGCCCGGCTCAAGGACCTCGAGGCTCTT
CTC
AACTCCAAGGAAGCTGCCCTGAGCACTGCTCTCAGTGAGAAGCGCACATTGGAGGGCGAGCTCCATG
AC
CTGCGGGGGCAGGTAGCCAAGCTTGAGGCGGCCCTGGGAGAGGCTAAGAAGCAGCTTCAGGATGAGAT
G
CTGAGGCGAGTGGATGCTGAGAACAGGCTACAGACGCTGAAGGAGGAGCTTGACTTCCAGAAGAACATT
TAC
AGCGAGGAACTGCGTGAGACCAAGCGCCGGCATGAGACGCGGCTTGTGGAGATCGATAACGGGAAGC
AG
CGAGAGTTTGAGAGCCGGCTGGCAGATGCCCTGCAGGAGCTGCGGGCTCAGCATGAGGACCAGGTGGA
A
CAGTATAAGAAGGAGCTAGAAAAGACATACTCCGCCAAGCTGGATAATGCCAGGCAGTCTGCTGAGAGG
AAC
AGCAACCTCGTGGGGGCTGCCCATGAGGAACTGCAGCAGTCTCGAATCCGCATTGACAGCCTCTCGG
CC
CAGCTCAGCCAGCTCCAAAAGCAGTTGGCAGCCAAGGAGGCAAAGCTGCGTGACCTGGAGGACTCGCT
G
GCCCGTGAGCGCGATACCAGCCGGCGCCTGCTGGCTGAGAAAGAGCGAGAGATGGCGGAGATGCGGGCG
AGG
ATGCAGCAGCAGCTGGACGAGTACCAGGAGCTGCTGGACATCAAGCTGGCCCTGGACATGGAGATCC
AT
GCCTATCGAAAGCTGCTGGAGGGCGAGGAGGAGAGGCTGCGCCTGTCCCCCAGCCCTACCTCGCAGCG
C
AGCCGTGGCCGCGCCTCCTCCCACTCATCCCAGTCTCAGGGTGGAGGCAGCGTCACCAAAAAGCGCAAG
CTG
GAGTCTTCCGAGAGCCGGAGCAGCTTCTCGCAGCATGCTCGCACTAGCGGGCGTGTGGCGGTAGAGG
AA
GTCGATGAAGAGGGAAAGTTCGTGCGGCTGCGCAACAAGTCCAACGAGGACCAGTCCATGGGCAACTG
G
CAGATCAGGCGTCAGAATGGTGACGATCCTTTGATGACCTATCGCTTCCCACCGAAGTTCACCCTAAAG
GCT
GGGCAGGTGGTGACGATCTGGGCTTCAGGAGCTGGGGCCACCCATAGCCCCCCTACTGACTTGGTGT
GG
AAGGCGCAGAACACCTGGGGCTGTGGGAGCAGCCTTCGCACCGCTCTCATCAACTCCACTGGAGAAGA
A
GTGGCCATGCGCAAGCTGGTGCGCTCACTGACCATGGTTGAGGACAATGAGGATGACGACGAGGATGGA
GAA
GAGCTCCTCCATCACCACCGTGGTTCCCACTGCAGCGGCTCGGGGGACCCCGCTGAGTACAACCTGC
GC
TCACGCACCGTGCTGTGCGGGACGTGTGGGCAGCCTGCTGACAAGGCTGCCGGTGGAGCGGGAGCCCA
G
GTGGGCGGATCCATCTCCTCTGGCTCTTCTGCCTCCAGTGTCACAGTCACTCGAAGCTTCCGCAGTGTG
GGG
GGCAGTGGGGGTGGCAGCTTCGGGGACAACCTAGTCACCCGCTCCTACCTCCTGGGCAACTCCAGTC
CC
CGGAGCCAGAGCTCCCAGAACTGCAGCATCATGTAA


Translation (665 aa):
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVV
S
REVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKA
RNTKKEGDLLAAQARLKDLEAL
L
NSKEAALSTALSEKRTLEGELHDLRGQVAK
LEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNI
Y
SE
ELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAER
N
SNLVGAAHEELQQSRIRIDSLSAQLSQLQKQ
LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA
R
MQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEE
RLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRK
L
ESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNE
DQSMGNWQIRRQNGDDPLMTYRFPPKFTLK
A
GQVVT
IWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLVRSLTMVEDNEDDDEDG
E
ELLHHHR
GSHCSGSGDPAEYNLRSRTVLCGTCGQPADKAAGGAGAQVGGSISSGSSASSVTVTRSFRSV
G
GSGGGSFGDNLVTRSYLLGNSSPRSQ
SSQNCSIM



Links Key
 Links to:   History report
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