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Report for CCDS37455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37455.1 Public Mus musculus 17 Rgmb 23 108 98 CCDS HistoryNCBI Gene:68799Re-query CCDS DB by CCDS ID:37455.1Re-query CCDS DB by GeneID:68799See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170578.2 ENSMUSP00000126177.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170578.2Link to Ensembl Protein Viewer:ENSMUSP00000126177.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170578Re-query CCDS DB by Protein ID:ENSMUSP00000126177
Current member NCBI NM_001372259.1 NP_001359188.1 Accepted alive Link to Nucleotide Sequence:NM_001372259.1Link to Protein Sequence:NP_001359188.1Re-query CCDS DB by Nucleotide ID:NM_001372259Re-query CCDS DB by Protein ID:NP_001359188Link to BLAST:NP_001359188.1
Original member NCBI NM_178615.3 NP_848730.2 Updated not alive Link to Nucleotide Sequence:NM_178615.3Link to Protein Sequence:NP_848730.2Re-query CCDS DB by Nucleotide ID:NM_178615Re-query CCDS DB by Protein ID:NP_848730
Current member NCBI NM_178615.4 NP_848730.2 Accepted alive Link to Nucleotide Sequence:NM_178615.4Link to Protein Sequence:NP_848730.2Re-query CCDS DB by Nucleotide ID:NM_178615Re-query CCDS DB by Protein ID:NP_848730Link to BLAST:NP_848730.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001359188.1 436 Q7TQ33 436 100% 0 0
NP_848730.2 436 Q7TQ33 436 100% 0 0

Chromosomal Locations for CCDS 37455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15807145 15807801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15820670 15821178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15826012 15826156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGGGCGTGAGAGCAGCACCTTCCTGCGCCGCCGCCCCCGCCGCCGCCGGGGCTGAGCAGTCCCGCCGCC
CCGGGCTCTGGCCGCCGTCGCCCCCGCCGCCGCTGTTGCTGCTGCTGCTGCTCAGCCTTGGGCTGCTCCA
CGCAGGTGATTGCCAACAGCCTACTCAATGCCGAATCCAGAAATGTACCACAGACTTCGTGGCCCTGACT
GCACACCTGAACTCTGCCGCTGATGGGTTTGACTCTGAGTTTTGCAAGGCACTTCGCGCCTATGCTGGCT
GCACCCAGCGAACTTCAAAGGCCTGCCGAGGCAACCTGGTGTACCATTCTGCTGTGTTAGGCATCAGTGA
TCTCATGAGCCAGAGGAACTGTTCCAAGGATGGACCCACATCTTCCACCAATCCGGAAGTGACCCATGAC
CCCTGTAACTACCACAGCCACGGGGGAGTCAGAGAACATGGGGGAGGGGACCAGAGACCTCCCAATTACC
TTTTCTGTGGCTTGTTTGGAGACCCTCACCTTCGAACTTTCAAGGATCACTTCCAGACATGCAAAGTGGA
AGGGGCCTGGCCACTCATAGACAACAATTACCTTTCGGTTCAAGTGACGAACGTGCCTGTGGTCCCCGGG
TCCAGTGCAACTGCTACAAACAAGGTCACGATTATCTTCAAAGCACAGCACGAGTGCACGGATCAGAAGG
TGTACCAAGCTGTGACAGATGACCTGCCGGCCGCCTTTGTAGATGGCACCACCAGTGGGGGGGACGGTGA
CGTGAAGAGTCTTCACATCGTGGAGAAGGAGAGTGGCCGCTACGTAGAGATGCATGCCCGCTACATAGGC
ACCACAGTGTTTGTGCGACAGCTGGGTCGCTACCTAACCCTCGCTATCCGGATGCCCGAAGACTTGGCCA
TGTCCTATGAGGAAAGCCAGGACTTGCAGCTGTGTGTGAATGGCTGCCCCATGAGTGAATGCATTGATGA
TGGACAAGGCCAGGTGTCTGCTATCCTGGGGCACAGCCTGCCTCACACCACCTCAGTGCAGGCCTGGCCT
GGCTACACACTGGAGACTGCCAGCACCCAATGCCACGAGAAGATGCCGGTGAAGGACATCTATTTCCAAT
CGTGTGTCTTCGACCTGCTCACCACTGGTGATGCCAACTTTACTGCTGCAGCCCACAGTGCCTTGGAGGA
TGTGGAAGCGCTGCACCCAAGAAAGGAACGCTGGCACATCTTCCCCAGCAGCTGTGGGGGATGTAGGGAT
TTGCCTGTTGGTCTTGGACTCACATGCTTGATCCTTATTATGTTTTTGTAG

Translation (436 aa):
MGVRAAPSCAAAPAAAGAEQSRRPGLWPPSPPPPLLLLLLLSLGLLHAGDCQQPTQCRIQKCTTDFVALT
AHLNSAADGFDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPEVTHD
PCNYHSHGGVREHGGGDQRPPNYLFCGLFGDPHLRTFKDHFQTCKVEGAWPLIDNNYLSVQVTNVPVVPG
SSATATNKVTIIFKAQHECTDQKVYQAVTDDLPAAFVDGTTSGGDGDVKSLHIVEKESGRYVEMHARYIG
TTVFVRQLGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPMSECIDDGQGQVSAILGHSLPHTTSVQAWP
GYTLETASTQCHEKMPVKDIYFQSCVFDLLTTGDANFTAAAHSALEDVEALHPRKERWHIFPSSCGGCRD
LPVGLGLTCLILIMFL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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