NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37363.1 Public Mus musculus 16 Nit2 23 108 98 CCDS HistoryNCBI Gene:52633Re-query CCDS DB by CCDS ID:37363.1Re-query CCDS DB by GeneID:52633See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023432.9 ENSMUSP00000023432.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023432.9Link to Ensembl Protein Viewer:ENSMUSP00000023432.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023432Re-query CCDS DB by Protein ID:ENSMUSP00000023432
Original member Current member NCBI NM_023175.1 NP_075664.1 Accepted alive Link to Nucleotide Sequence:NM_023175.1Link to Protein Sequence:NP_075664.1Re-query CCDS DB by Nucleotide ID:NM_023175Re-query CCDS DB by Protein ID:NP_075664Link to BLAST:NP_075664.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075664.1 276 Q9JHW2 276 100% 0 0

Chromosomal Locations for CCDS 37363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57157075 57157166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57157484 57157539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57159418 57159516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57160067 57160145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57161130 57161204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57161691 57161784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57163518 57163606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57164198 57164318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57166098 57166216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57167281 57167287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGTCTACTTTCCGCCTGGCCCTCATACAGCTTCAAGTTTCTTCCATTAAATCAGATAACCTTACCCGGG
CTTGTAGCCTAGTGCGGGAGGCAGCAAAGCAAGGTGCCAACATAGTTTCTCTGCCTGAGTGCTTCAATTC
TCCATATGGAACAACCTACTTTCCTGACTATGCAGAGAAGATTCCTGGAGAGTCCACACAAAAGCTTTCT
GAAGTAGCAAAGGAGAGCAGCATATATCTCATTGGAGGCTCCATCCCTGAAGAGGATGCTGGGAAACTGT
ATAATACCTGCTCTGTGTTTGGGCCTGATGGAAGTTTACTGGTAAAGCACAGGAAGATCCATCTGTTTGA
CATTGATGTTCCTGGGAAAATTACGTTTCAAGAATCTAAAACATTGAGCCCTGGTGATAGTTTCTCCACA
TTTGATACGCCTTACTGCAAAGTGGGCCTGGGCATCTGCTATGATATGCGCTTCGCGGAGCTTGCACAAA
TCTATGCACAAAGAGGCTGCCAGCTCTTGGTGTATCCTGGAGCTTTCAATCTGACCACAGGACCAGCCCA
CTGGGAGCTGCTTCAGCGAGCCCGGGCTGTTGATAATCAGGTGTATGTGGCTACAGCCTCTCCTGCTCGG
GATGACAAAGCCTCGTATGTGGCCTGGGGACACAGCACTGTTGTGGATCCTTGGGGGCAGGTCCTAACCA
AAGCTGGCACGGAGGAAACAATCCTGTACTCAGACATAGACCTGAAGAAGCTGGCTGAAATTCGGCAGCA
AATCCCCATTTTAAAACAGAAACGAGCAGACCTCTATACAGTGGAATCAAAGAAGCCTTGA

Translation (276 aa):
MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLS
EVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFST
FDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPAR
DDKASYVAWGHSTVVDPWGQVLTKAGTEETILYSDIDLKKLAEIRQQIPILKQKRADLYTVESKKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH