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Report for CCDS37248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37248.1 Public Mus musculus 16 Rpl39l 23 108 98 CCDS HistoryNCBI Gene:68172Re-query CCDS DB by CCDS ID:37248.1Re-query CCDS DB by GeneID:68172See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044103.5 ENSMUSP00000041794.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044103.5Link to Ensembl Protein Viewer:ENSMUSP00000041794.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044103Re-query CCDS DB by Protein ID:ENSMUSP00000041794
Original member Current member EBI ENSMUST00000121292.7 ENSMUSP00000112791.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121292.7Link to Ensembl Protein Viewer:ENSMUSP00000112791.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121292Re-query CCDS DB by Protein ID:ENSMUSP00000112791
Original member Current member NCBI NM_026594.2 NP_080870.1 Accepted alive Link to Nucleotide Sequence:NM_026594.2Link to Protein Sequence:NP_080870.1Re-query CCDS DB by Nucleotide ID:NM_026594Re-query CCDS DB by Protein ID:NP_080870Link to BLAST:NP_080870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080870.1 51 Q9CQD0 51 100% 0 0

Chromosomal Locations for CCDS 37248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10174310 10174465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (156 nt):
ATGGCTTCTCACAAGACCTTCAGGATCAAGCGATTCCTGGCCAAGAAACAAAAGCAAAATCGTCCCATTC
CACAATGGATTCAGATGAAAACTGGCAATAAAATCATGTACAACTCCAAGCGGAGACATTGGAGACGAAC
CAAATTGGGTCTATAA

Translation (51 aa):
MASHKTFRIKRFLAKKQKQNRPIPQWIQMKTGNKIMYNSKRRHWRRTKLGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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